miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 114896 0.68 0.526924
Target:  5'- cGCUaGCG-CGGCCGGcACCGGuuuCGGCa -3'
miRNA:   3'- aUGAgCGCgGUCGGCC-UGGCCc--GCCG- -5'
29791 3' -64.6 NC_006273.1 + 133476 0.68 0.526924
Target:  5'- gGCggCGUGCaGGCgCGGACgCuGGCGGCg -3'
miRNA:   3'- aUGa-GCGCGgUCG-GCCUG-GcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 185275 0.68 0.517891
Target:  5'- cUGCUCcguGUGUCGGCCgcucaaacgucGGGCCGGcGUGGUg -3'
miRNA:   3'- -AUGAG---CGCGGUCGG-----------CCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 112250 0.68 0.517891
Target:  5'- gGCUgGCGCgAGgacgugcucaUGGACCGGGUGcGCa -3'
miRNA:   3'- aUGAgCGCGgUCg---------GCCUGGCCCGC-CG- -5'
29791 3' -64.6 NC_006273.1 + 95017 0.68 0.517891
Target:  5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3'
miRNA:   3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 197294 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 149691 0.68 0.500015
Target:  5'- uUGCUgCGCGCCGGUgGcGACUGGcucuCGGCc -3'
miRNA:   3'- -AUGA-GCGCGGUCGgC-CUGGCCc---GCCG- -5'
29791 3' -64.6 NC_006273.1 + 127234 0.68 0.536016
Target:  5'- --gUCGCGCCucgauguuGGCCGGguucaacgguuGCCGGuCGGCc -3'
miRNA:   3'- augAGCGCGG--------UCGGCC-----------UGGCCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 161673 0.68 0.536016
Target:  5'- gGgUCgGCGCuCuGCCGG-CUGcGGCGGCa -3'
miRNA:   3'- aUgAG-CGCG-GuCGGCCuGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 124841 0.68 0.500015
Target:  5'- ---gCGCGCCAG-CGGuCCGuggaagagcGGCGGCa -3'
miRNA:   3'- augaGCGCGGUCgGCCuGGC---------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 158234 0.68 0.536016
Target:  5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189042 0.67 0.600917
Target:  5'- aGC-CGCGUggugggGGcCCGGACC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGg-----UC-GGCCUGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 81738 0.67 0.600917
Target:  5'- cGCUUGCccgaGCCcuGCgCGGAgCCGGGCuGCg -3'
miRNA:   3'- aUGAGCG----CGGu-CG-GCCU-GGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 636 0.67 0.582197
Target:  5'- cGCUuucugCGCGCU-GCCGGugCGuGUGGCu -3'
miRNA:   3'- aUGA-----GCGCGGuCGGCCugGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38136 0.67 0.591544
Target:  5'- cGCUCGgGCCGG-CGaGGCCGacGCGGUu -3'
miRNA:   3'- aUGAGCgCGGUCgGC-CUGGCc-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 60233 0.67 0.591544
Target:  5'- cUACUcaCGCGuCCA-CCGcGACUGGGCacGGCg -3'
miRNA:   3'- -AUGA--GCGC-GGUcGGC-CUGGCCCG--CCG- -5'
29791 3' -64.6 NC_006273.1 + 34168 0.67 0.591544
Target:  5'- gGCUCGCGCCauaaacguGGCgUGGAaaaaaacGGCGGCg -3'
miRNA:   3'- aUGAGCGCGG--------UCG-GCCUggc----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 213883 0.67 0.582197
Target:  5'- cGCUCGCauaGCuCGGCC--ACCGguGGCGGCa -3'
miRNA:   3'- aUGAGCG---CG-GUCGGccUGGC--CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78512 0.67 0.582197
Target:  5'- cUGCg-GCGCCGcCCGGAcaCCGGGCGcCg -3'
miRNA:   3'- -AUGagCGCGGUcGGCCU--GGCCCGCcG- -5'
29791 3' -64.6 NC_006273.1 + 45888 0.67 0.554358
Target:  5'- cACagCGCGgCGGCCGGGCCGccgaGGCc -3'
miRNA:   3'- aUGa-GCGCgGUCGGCCUGGCccg-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.