miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 34168 0.67 0.591544
Target:  5'- gGCUCGCGCCauaaacguGGCgUGGAaaaaaacGGCGGCg -3'
miRNA:   3'- aUGAGCGCGG--------UCG-GCCUggc----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 213883 0.67 0.582197
Target:  5'- cGCUCGCauaGCuCGGCC--ACCGguGGCGGCa -3'
miRNA:   3'- aUGAGCG---CG-GUCGGccUGGC--CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78512 0.67 0.582197
Target:  5'- cUGCg-GCGCCGcCCGGAcaCCGGGCGcCg -3'
miRNA:   3'- -AUGagCGCGGUcGGCCU--GGCCCGCcG- -5'
29791 3' -64.6 NC_006273.1 + 137444 0.67 0.581264
Target:  5'- gUGCUCuacgucaCGCCAGacuuggacuuuuaCUGGgugcuGCCGGGCGGCu -3'
miRNA:   3'- -AUGAGc------GCGGUC-------------GGCC-----UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 192533 0.67 0.57288
Target:  5'- -uUUCGCGuCCAGUCGGACgugugaccguUGGGCaacggaacGGCg -3'
miRNA:   3'- auGAGCGC-GGUCGGCCUG----------GCCCG--------CCG- -5'
29791 3' -64.6 NC_006273.1 + 152600 0.67 0.554358
Target:  5'- ---cUGCGCCAGCgGGugUGucucGGUGGCc -3'
miRNA:   3'- augaGCGCGGUCGgCCugGC----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 172211 0.67 0.600917
Target:  5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3'
miRNA:   3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5'
29791 3' -64.6 NC_006273.1 + 182628 0.67 0.600917
Target:  5'- gGC-CGCGUCuuGGCCGaGGCCGGGgaGGa -3'
miRNA:   3'- aUGaGCGCGG--UCGGC-CUGGCCCg-CCg -5'
29791 3' -64.6 NC_006273.1 + 98185 0.67 0.585932
Target:  5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3'
miRNA:   3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 40574 0.67 0.582197
Target:  5'- cGCUuucugCGCGCU-GCCGGugCGuGUGGCu -3'
miRNA:   3'- aUGA-----GCGCGGuCGGCCugGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 212164 0.67 0.582197
Target:  5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3'
miRNA:   3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 198302 0.67 0.582197
Target:  5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3'
miRNA:   3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5'
29791 3' -64.6 NC_006273.1 + 144648 0.67 0.563598
Target:  5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 18523 0.67 0.551594
Target:  5'- gGCcugCGCGCCuGCCGGccuuuugaccacauGCCGGccGCGGa -3'
miRNA:   3'- aUGa--GCGCGGuCGGCC--------------UGGCC--CGCCg -5'
29791 3' -64.6 NC_006273.1 + 45888 0.67 0.554358
Target:  5'- cACagCGCGgCGGCCGGGCCGccgaGGCc -3'
miRNA:   3'- aUGa-GCGCgGUCGGCCUGGCccg-CCG- -5'
29791 3' -64.6 NC_006273.1 + 113501 0.66 0.629128
Target:  5'- aUGC-CGUaGCCGGCggCGGGuugcCCGGGgGGCg -3'
miRNA:   3'- -AUGaGCG-CGGUCG--GCCU----GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 232886 0.66 0.629128
Target:  5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3'
miRNA:   3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5'
29791 3' -64.6 NC_006273.1 + 171496 0.66 0.629128
Target:  5'- --aUCGgGCCGGCCcaaaGGAUCGGGaagaGGa -3'
miRNA:   3'- augAGCgCGGUCGG----CCUGGCCCg---CCg -5'
29791 3' -64.6 NC_006273.1 + 162373 0.66 0.638543
Target:  5'- gGCg-GCGCUAGUgGuGGCgGuGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgC-CUGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 143343 0.66 0.629128
Target:  5'- -cCUCauGCGgCuGuuGGACCGGcGCGGUc -3'
miRNA:   3'- auGAG--CGCgGuCggCCUGGCC-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.