miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 148475 1.08 0.00104
Target:  5'- cUACUCGCGCCAGCCGGACCGGGCGGCc -3'
miRNA:   3'- -AUGAGCGCGGUCGGCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 151980 0.88 0.025198
Target:  5'- cGCUCggGCGCC-GCCGGGCCGGGUGGCg -3'
miRNA:   3'- aUGAG--CGCGGuCGGCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 90462 0.76 0.18364
Target:  5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3'
miRNA:   3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 210005 0.74 0.220424
Target:  5'- cUGCggGuCGCCAGCCGGGucucuuggaucCCGGGgGGCa -3'
miRNA:   3'- -AUGagC-GCGGUCGGCCU-----------GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 8214 0.74 0.246481
Target:  5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3'
miRNA:   3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5'
29791 3' -64.6 NC_006273.1 + 34507 0.73 0.251989
Target:  5'- gGCgUUGaGCCAGCgaaaaugcugCGGAUCGGGCGGCa -3'
miRNA:   3'- aUG-AGCgCGGUCG----------GCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 190131 0.73 0.251989
Target:  5'- uUGCggCGCGagCAGCC--GCCGGGCGGCa -3'
miRNA:   3'- -AUGa-GCGCg-GUCGGccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 122984 0.73 0.287183
Target:  5'- -cCUCGUccGCCGcGCCGGAgCGuGGCGGUa -3'
miRNA:   3'- auGAGCG--CGGU-CGGCCUgGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 187183 0.73 0.287183
Target:  5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3'
miRNA:   3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 13560 0.72 0.312729
Target:  5'- aUACg-GCGCaacGCCGGgugcucacccGCCGGGCGGCc -3'
miRNA:   3'- -AUGagCGCGgu-CGGCC----------UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 48026 0.72 0.312729
Target:  5'- aACagCGUGCCuccGCCGGACauGGCGGUg -3'
miRNA:   3'- aUGa-GCGCGGu--CGGCCUGgcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 81594 0.72 0.319379
Target:  5'- cGCagGCGgCGGCCGcGGCCGcGGCGGa -3'
miRNA:   3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5'
29791 3' -64.6 NC_006273.1 + 76612 0.71 0.339961
Target:  5'- cGCUaCGCGUCcguGGCCGcGGCCG-GCGGCc -3'
miRNA:   3'- aUGA-GCGCGG---UCGGC-CUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 115968 0.71 0.354208
Target:  5'- cAUagGCGCUGGCUGaGA-CGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGGC-CUgGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 196629 0.71 0.375604
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCa -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 1737 0.71 0.375604
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCa -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 232951 0.71 0.376357
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38058 0.71 0.376357
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 39152 0.7 0.383945
Target:  5'- ---aCGaCGCCgggaaAGCCGGGCUGcGGCGGUg -3'
miRNA:   3'- augaGC-GCGG-----UCGGCCUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 115477 0.7 0.383945
Target:  5'- ----aGCGUCGGCauaugaaGGGCgCGGGCGGCc -3'
miRNA:   3'- augagCGCGGUCGg------CCUG-GCCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.