miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 143946 0.7 0.383945
Target:  5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3'
miRNA:   3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 103296 0.7 0.391634
Target:  5'- cGCUCcagcagcgGUGCCAGCgCGGGCuCGGGUaGCa -3'
miRNA:   3'- aUGAG--------CGCGGUCG-GCCUG-GCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 189954 0.7 0.391634
Target:  5'- aGCUCGU--CGGCCGGcgUGGGCGGCu -3'
miRNA:   3'- aUGAGCGcgGUCGGCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 79946 0.7 0.399422
Target:  5'- aACcCGCGUC-GCCGGGCaC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGGuCGGCCUG-GcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 68215 0.7 0.399422
Target:  5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGCa -3'
miRNA:   3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139315 0.7 0.407308
Target:  5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3'
miRNA:   3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 94072 0.7 0.407309
Target:  5'- cGCgUCGUGCgCAugcGCCGGuauuuuuccACUGGGCGGCc -3'
miRNA:   3'- aUG-AGCGCG-GU---CGGCC---------UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189822 0.7 0.423371
Target:  5'- aGCUUGUaccGCCucGGCCacGCCGGGUGGCa -3'
miRNA:   3'- aUGAGCG---CGG--UCGGccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 103776 0.7 0.423371
Target:  5'- aACcgCGCGCguGCCaGGCCGuGCGGUa -3'
miRNA:   3'- aUGa-GCGCGguCGGcCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 31741 0.7 0.423371
Target:  5'- gGCUCGgGUCGGCUGG-UCGGGCcgucGCg -3'
miRNA:   3'- aUGAGCgCGGUCGGCCuGGCCCGc---CG- -5'
29791 3' -64.6 NC_006273.1 + 128105 0.69 0.431542
Target:  5'- gGCUCGUG-CAGC---ACCGGGUGGCa -3'
miRNA:   3'- aUGAGCGCgGUCGgccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 215901 0.69 0.439806
Target:  5'- cGC-CGCGCCAGCUGG-CaCGGaGuUGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuG-GCC-C-GCCG- -5'
29791 3' -64.6 NC_006273.1 + 144468 0.69 0.439806
Target:  5'- gGCUCGCGC--GCCGGcgucucGCCGGGCa-- -3'
miRNA:   3'- aUGAGCGCGguCGGCC------UGGCCCGccg -5'
29791 3' -64.6 NC_006273.1 + 80427 0.69 0.446482
Target:  5'- gGC-CGUGCUGGCCGGauuguugugagaaGCCGagggaaaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCC-------------UGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 117609 0.69 0.448159
Target:  5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3'
miRNA:   3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 120740 0.69 0.456599
Target:  5'- ---gCGgGCCAggauGCCGGccGCCaGGGCGGCc -3'
miRNA:   3'- augaGCgCGGU----CGGCC--UGG-CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 131826 0.69 0.465124
Target:  5'- cACUCgGCGaCCAGCCcgcacggccugGGGCUGGcCGGCu -3'
miRNA:   3'- aUGAG-CGC-GGUCGG-----------CCUGGCCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139311 0.69 0.465124
Target:  5'- aGCUCGCGCUGGCuuuccuCGGGCgaguuguaguCGcGGUGGCg -3'
miRNA:   3'- aUGAGCGCGGUCG------GCCUG----------GC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 64831 0.69 0.465124
Target:  5'- gAgUCGCGguUCGGCCGGACCGuGcacgcgcucucGCGGCc -3'
miRNA:   3'- aUgAGCGC--GGUCGGCCUGGC-C-----------CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 229863 0.69 0.465124
Target:  5'- cACgCGgGCUgAGCCGGACCGcGUGGUg -3'
miRNA:   3'- aUGaGCgCGG-UCGGCCUGGCcCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.