miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 75255 0.69 0.473731
Target:  5'- gACgaaGCGCUGGCC--GCCGcGGCGGCc -3'
miRNA:   3'- aUGag-CGCGGUCGGccUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140757 0.69 0.473731
Target:  5'- gACgagCGCGUCAGCa-GGCCGGGUcgaugacgccGGCg -3'
miRNA:   3'- aUGa--GCGCGGUCGgcCUGGCCCG----------CCG- -5'
29791 3' -64.6 NC_006273.1 + 147557 0.69 0.473731
Target:  5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 155763 0.69 0.473731
Target:  5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3'
miRNA:   3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 122803 0.69 0.473731
Target:  5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3'
miRNA:   3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 144422 0.69 0.482417
Target:  5'- cGC-CGCGgCGGCggaCGGuuCGGGUGGCg -3'
miRNA:   3'- aUGaGCGCgGUCG---GCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140182 0.69 0.482417
Target:  5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3'
miRNA:   3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140776 0.69 0.482417
Target:  5'- ---cCGCGgCGGgUGGACCGGGaagcCGGCg -3'
miRNA:   3'- augaGCGCgGUCgGCCUGGCCC----GCCG- -5'
29791 3' -64.6 NC_006273.1 + 56103 0.69 0.485913
Target:  5'- aUGCUCuggcgGCGCC-GCCGGauuucgucgaaacggGCCGcggaGGCGGCg -3'
miRNA:   3'- -AUGAG-----CGCGGuCGGCC---------------UGGC----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 174123 0.68 0.49118
Target:  5'- cGCgCGCGCCgcgcugcaguGGCUGGACCuGGGCccGCa -3'
miRNA:   3'- aUGaGCGCGG----------UCGGCCUGG-CCCGc-CG- -5'
29791 3' -64.6 NC_006273.1 + 176702 0.68 0.500015
Target:  5'- gUGCU-GCGCgAGuuGGugACCGaGGCGGUg -3'
miRNA:   3'- -AUGAgCGCGgUCggCC--UGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 149691 0.68 0.500015
Target:  5'- uUGCUgCGCGCCGGUgGcGACUGGcucuCGGCc -3'
miRNA:   3'- -AUGA-GCGCGGUCGgC-CUGGCCc---GCCG- -5'
29791 3' -64.6 NC_006273.1 + 197294 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 124841 0.68 0.500015
Target:  5'- ---gCGCGCCAG-CGGuCCGuggaagagcGGCGGCa -3'
miRNA:   3'- augaGCGCGGUCgGCCuGGC---------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 2401 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 95017 0.68 0.517891
Target:  5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3'
miRNA:   3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 185275 0.68 0.517891
Target:  5'- cUGCUCcguGUGUCGGCCgcucaaacgucGGGCCGGcGUGGUg -3'
miRNA:   3'- -AUGAG---CGCGGUCGG-----------CCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 118159 0.68 0.517891
Target:  5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 30673 0.68 0.517891
Target:  5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3'
miRNA:   3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 112250 0.68 0.517891
Target:  5'- gGCUgGCGCgAGgacgugcucaUGGACCGGGUGcGCa -3'
miRNA:   3'- aUGAgCGCGgUCg---------GCCUGGCCCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.