Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 198302 | 0.67 | 0.582197 |
Target: 5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3' miRNA: 3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 212164 | 0.67 | 0.582197 |
Target: 5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3' miRNA: 3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 78512 | 0.67 | 0.582197 |
Target: 5'- cUGCg-GCGCCGcCCGGAcaCCGGGCGcCg -3' miRNA: 3'- -AUGagCGCGGUcGGCCU--GGCCCGCcG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 98185 | 0.67 | 0.585932 |
Target: 5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3' miRNA: 3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 34168 | 0.67 | 0.591544 |
Target: 5'- gGCUCGCGCCauaaacguGGCgUGGAaaaaaacGGCGGCg -3' miRNA: 3'- aUGAGCGCGG--------UCG-GCCUggc----CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 60233 | 0.67 | 0.591544 |
Target: 5'- cUACUcaCGCGuCCA-CCGcGACUGGGCacGGCg -3' miRNA: 3'- -AUGA--GCGC-GGUcGGC-CUGGCCCG--CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 199892 | 0.67 | 0.591544 |
Target: 5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3' miRNA: 3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 38136 | 0.67 | 0.591544 |
Target: 5'- cGCUCGgGCCGG-CGaGGCCGacGCGGUu -3' miRNA: 3'- aUGAGCgCGGUCgGC-CUGGCc-CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 81738 | 0.67 | 0.600917 |
Target: 5'- cGCUUGCccgaGCCcuGCgCGGAgCCGGGCuGCg -3' miRNA: 3'- aUGAGCG----CGGu-CG-GCCU-GGCCCGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 172211 | 0.67 | 0.600917 |
Target: 5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3' miRNA: 3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 189042 | 0.67 | 0.600917 |
Target: 5'- aGC-CGCGUggugggGGcCCGGACC-GGCGGCg -3' miRNA: 3'- aUGaGCGCGg-----UC-GGCCUGGcCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 182628 | 0.67 | 0.600917 |
Target: 5'- gGC-CGCGUCuuGGCCGaGGCCGGGgaGGa -3' miRNA: 3'- aUGaGCGCGG--UCGGC-CUGGCCCg-CCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 141075 | 0.67 | 0.600917 |
Target: 5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3' miRNA: 3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 119359 | 0.67 | 0.600917 |
Target: 5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3' miRNA: 3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 43216 | 0.67 | 0.600917 |
Target: 5'- gACgUCGCGaUCGGCaggCGGGCCGGcuaCGGCg -3' miRNA: 3'- aUG-AGCGC-GGUCG---GCCUGGCCc--GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 196972 | 0.66 | 0.610308 |
Target: 5'- cGCUCGuCGCUguuGCCGccACCGcagcGGCGGCg -3' miRNA: 3'- aUGAGC-GCGGu--CGGCc-UGGC----CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 82131 | 0.66 | 0.610308 |
Target: 5'- cUGCUCuGCGuCCAGaCGGGCCaGGGCcagaaGCa -3' miRNA: 3'- -AUGAG-CGC-GGUCgGCCUGG-CCCGc----CG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 216201 | 0.66 | 0.614069 |
Target: 5'- aAUUCGaCGCCgcauucguuguacggAGCgCGGcACaUGGGCGGCg -3' miRNA: 3'- aUGAGC-GCGG---------------UCG-GCC-UG-GCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 233658 | 0.66 | 0.618773 |
Target: 5'- cGCUUGCGCU-GUCGGcccagucgccaccGCCGcGGCGGa -3' miRNA: 3'- aUGAGCGCGGuCGGCC-------------UGGC-CCGCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 102838 | 0.66 | 0.618773 |
Target: 5'- ---gCGCGCCGGCCGcGuccaCGGGCacgcuguugggugGGCa -3' miRNA: 3'- augaGCGCGGUCGGC-Cug--GCCCG-------------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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