miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 37298 0.66 0.629128
Target:  5'- -cCUUGCGaCGGCCGGACauGcCGGCa -3'
miRNA:   3'- auGAGCGCgGUCGGCCUGgcCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 178801 0.66 0.629128
Target:  5'- cUACcUGaCGUCcaaAGgUGGAUCGGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGG---UCgGCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 105862 0.66 0.629128
Target:  5'- gGCgcaGCGCCGGCCauucuCCGGGUcGCg -3'
miRNA:   3'- aUGag-CGCGGUCGGccu--GGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 113501 0.66 0.629128
Target:  5'- aUGC-CGUaGCCGGCggCGGGuugcCCGGGgGGCg -3'
miRNA:   3'- -AUGaGCG-CGGUCG--GCCU----GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 232886 0.66 0.629128
Target:  5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3'
miRNA:   3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5'
29791 3' -64.6 NC_006273.1 + 171496 0.66 0.629128
Target:  5'- --aUCGgGCCGGCCcaaaGGAUCGGGaagaGGa -3'
miRNA:   3'- augAGCgCGGUCGG----CCUGGCCCg---CCg -5'
29791 3' -64.6 NC_006273.1 + 143343 0.66 0.629128
Target:  5'- -cCUCauGCGgCuGuuGGACCGGcGCGGUc -3'
miRNA:   3'- auGAG--CGCgGuCggCCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 61564 0.66 0.629128
Target:  5'- aUugUCcuCGUCGGCCGGGUCGcGCGGCc -3'
miRNA:   3'- -AugAGc-GCGGUCGGCCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 73745 0.66 0.629128
Target:  5'- gGCg-GCGgCGGCCGaGGcCCGGcaGCGGCg -3'
miRNA:   3'- aUGagCGCgGUCGGC-CU-GGCC--CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 194870 0.66 0.629128
Target:  5'- aGCgguagCGCGCCGGgucgccuguCCGGcagcaGCCGGGCcGCc -3'
miRNA:   3'- aUGa----GCGCGGUC---------GGCC-----UGGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 37993 0.66 0.629128
Target:  5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3'
miRNA:   3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5'
29791 3' -64.6 NC_006273.1 + 86566 0.66 0.628186
Target:  5'- --aUCGcCGCCGGCCGGucgcucgcgaaaaGCCGuGGCauugagacgcacGGCg -3'
miRNA:   3'- augAGC-GCGGUCGGCC-------------UGGC-CCG------------CCG- -5'
29791 3' -64.6 NC_006273.1 + 140592 0.66 0.619714
Target:  5'- cGC-CGCGacccCCAGCCGGAaaaaaaaagcCCGGaGgGGCc -3'
miRNA:   3'- aUGaGCGC----GGUCGGCCU----------GGCC-CgCCG- -5'
29791 3' -64.6 NC_006273.1 + 78710 0.66 0.619714
Target:  5'- --aUCGuCGCgGGCCuGcACCaGGCGGCg -3'
miRNA:   3'- augAGC-GCGgUCGGcC-UGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 156869 0.66 0.619714
Target:  5'- gACg-GCGCC---CGGuguCCGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGucgGCCu--GGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 233658 0.66 0.618773
Target:  5'- cGCUUGCGCU-GUCGGcccagucgccaccGCCGcGGCGGa -3'
miRNA:   3'- aUGAGCGCGGuCGGCC-------------UGGC-CCGCCg -5'
29791 3' -64.6 NC_006273.1 + 102838 0.66 0.618773
Target:  5'- ---gCGCGCCGGCCGcGuccaCGGGCacgcuguugggugGGCa -3'
miRNA:   3'- augaGCGCGGUCGGC-Cug--GCCCG-------------CCG- -5'
29791 3' -64.6 NC_006273.1 + 216201 0.66 0.614069
Target:  5'- aAUUCGaCGCCgcauucguuguacggAGCgCGGcACaUGGGCGGCg -3'
miRNA:   3'- aUGAGC-GCGG---------------UCG-GCC-UG-GCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 82131 0.66 0.610308
Target:  5'- cUGCUCuGCGuCCAGaCGGGCCaGGGCcagaaGCa -3'
miRNA:   3'- -AUGAG-CGC-GGUCgGCCUGG-CCCGc----CG- -5'
29791 3' -64.6 NC_006273.1 + 196972 0.66 0.610308
Target:  5'- cGCUCGuCGCUguuGCCGccACCGcagcGGCGGCg -3'
miRNA:   3'- aUGAGC-GCGGu--CGGCc-UGGC----CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.