miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 81738 0.67 0.600917
Target:  5'- cGCUUGCccgaGCCcuGCgCGGAgCCGGGCuGCg -3'
miRNA:   3'- aUGAGCG----CGGu-CG-GCCU-GGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 189042 0.67 0.600917
Target:  5'- aGC-CGCGUggugggGGcCCGGACC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGg-----UC-GGCCUGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 141075 0.67 0.600917
Target:  5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3'
miRNA:   3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5'
29791 3' -64.6 NC_006273.1 + 43216 0.67 0.600917
Target:  5'- gACgUCGCGaUCGGCaggCGGGCCGGcuaCGGCg -3'
miRNA:   3'- aUG-AGCGC-GGUCG---GCCUGGCCc--GCCG- -5'
29791 3' -64.6 NC_006273.1 + 172211 0.67 0.600917
Target:  5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3'
miRNA:   3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5'
29791 3' -64.6 NC_006273.1 + 182628 0.67 0.600917
Target:  5'- gGC-CGCGUCuuGGCCGaGGCCGGGgaGGa -3'
miRNA:   3'- aUGaGCGCGG--UCGGC-CUGGCCCg-CCg -5'
29791 3' -64.6 NC_006273.1 + 119359 0.67 0.600917
Target:  5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3'
miRNA:   3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38136 0.67 0.591544
Target:  5'- cGCUCGgGCCGG-CGaGGCCGacGCGGUu -3'
miRNA:   3'- aUGAGCgCGGUCgGC-CUGGCc-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 60233 0.67 0.591544
Target:  5'- cUACUcaCGCGuCCA-CCGcGACUGGGCacGGCg -3'
miRNA:   3'- -AUGA--GCGC-GGUcGGC-CUGGCCCG--CCG- -5'
29791 3' -64.6 NC_006273.1 + 199892 0.67 0.591544
Target:  5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3'
miRNA:   3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 34168 0.67 0.591544
Target:  5'- gGCUCGCGCCauaaacguGGCgUGGAaaaaaacGGCGGCg -3'
miRNA:   3'- aUGAGCGCGG--------UCG-GCCUggc----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 98185 0.67 0.585932
Target:  5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3'
miRNA:   3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 40574 0.67 0.582197
Target:  5'- cGCUuucugCGCGCU-GCCGGugCGuGUGGCu -3'
miRNA:   3'- aUGA-----GCGCGGuCGGCCugGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 212164 0.67 0.582197
Target:  5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3'
miRNA:   3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 198302 0.67 0.582197
Target:  5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3'
miRNA:   3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5'
29791 3' -64.6 NC_006273.1 + 636 0.67 0.582197
Target:  5'- cGCUuucugCGCGCU-GCCGGugCGuGUGGCu -3'
miRNA:   3'- aUGA-----GCGCGGuCGGCCugGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78512 0.67 0.582197
Target:  5'- cUGCg-GCGCCGcCCGGAcaCCGGGCGcCg -3'
miRNA:   3'- -AUGagCGCGGUcGGCCU--GGCCCGCcG- -5'
29791 3' -64.6 NC_006273.1 + 213883 0.67 0.582197
Target:  5'- cGCUCGCauaGCuCGGCC--ACCGguGGCGGCa -3'
miRNA:   3'- aUGAGCG---CG-GUCGGccUGGC--CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 137444 0.67 0.581264
Target:  5'- gUGCUCuacgucaCGCCAGacuuggacuuuuaCUGGgugcuGCCGGGCGGCu -3'
miRNA:   3'- -AUGAGc------GCGGUC-------------GGCC-----UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 192533 0.67 0.57288
Target:  5'- -uUUCGCGuCCAGUCGGACgugugaccguUGGGCaacggaacGGCg -3'
miRNA:   3'- auGAGCGC-GGUCGGCCUG----------GCCCG--------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.