miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 636 0.67 0.582197
Target:  5'- cGCUuucugCGCGCU-GCCGGugCGuGUGGCu -3'
miRNA:   3'- aUGA-----GCGCGGuCGGCCugGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 1737 0.71 0.375604
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCa -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 2401 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 8214 0.74 0.246481
Target:  5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3'
miRNA:   3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5'
29791 3' -64.6 NC_006273.1 + 13560 0.72 0.312729
Target:  5'- aUACg-GCGCaacGCCGGgugcucacccGCCGGGCGGCc -3'
miRNA:   3'- -AUGagCGCGgu-CGGCC----------UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 14351 0.66 0.645132
Target:  5'- cAgUUGUGCC-GCCGGAgcuccccgcgcugcCUGuGGCGGCu -3'
miRNA:   3'- aUgAGCGCGGuCGGCCU--------------GGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 18523 0.67 0.551594
Target:  5'- gGCcugCGCGCCuGCCGGccuuuugaccacauGCCGGccGCGGa -3'
miRNA:   3'- aUGa--GCGCGGuCGGCC--------------UGGCC--CGCCg -5'
29791 3' -64.6 NC_006273.1 + 19487 0.68 0.526924
Target:  5'- aACUcCGUGCCAGCUGG--CGcGGCGGa -3'
miRNA:   3'- aUGA-GCGCGGUCGGCCugGC-CCGCCg -5'
29791 3' -64.6 NC_006273.1 + 21689 0.66 0.629128
Target:  5'- uUGCUgaUGUGCCAGCCGucgccgcaGGCCuuugucGGcGCGGCu -3'
miRNA:   3'- -AUGA--GCGCGGUCGGC--------CUGG------CC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 30673 0.68 0.517891
Target:  5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3'
miRNA:   3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 31741 0.7 0.423371
Target:  5'- gGCUCGgGUCGGCUGG-UCGGGCcgucGCg -3'
miRNA:   3'- aUGAGCgCGGUCGGCCuGGCCCGc---CG- -5'
29791 3' -64.6 NC_006273.1 + 34168 0.67 0.591544
Target:  5'- gGCUCGCGCCauaaacguGGCgUGGAaaaaaacGGCGGCg -3'
miRNA:   3'- aUGAGCGCGG--------UCG-GCCUggc----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 34507 0.73 0.251989
Target:  5'- gGCgUUGaGCCAGCgaaaaugcugCGGAUCGGGCGGCa -3'
miRNA:   3'- aUG-AGCgCGGUCG----------GCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 37298 0.66 0.629128
Target:  5'- -cCUUGCGaCGGCCGGACauGcCGGCa -3'
miRNA:   3'- auGAGCGCgGUCGGCCUGgcCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 37993 0.66 0.629128
Target:  5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3'
miRNA:   3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5'
29791 3' -64.6 NC_006273.1 + 38058 0.71 0.376357
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38136 0.67 0.591544
Target:  5'- cGCUCGgGCCGG-CGaGGCCGacGCGGUu -3'
miRNA:   3'- aUGAGCgCGGUCgGC-CUGGCc-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38195 0.66 0.638543
Target:  5'- aGCcCGCGCCgcGGCCGcucauCCGGaGaCGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGCcu---GGCC-C-GCCG- -5'
29791 3' -64.6 NC_006273.1 + 38755 0.66 0.657355
Target:  5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3'
miRNA:   3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5'
29791 3' -64.6 NC_006273.1 + 39152 0.7 0.383945
Target:  5'- ---aCGaCGCCgggaaAGCCGGGCUGcGGCGGUg -3'
miRNA:   3'- augaGC-GCGG-----UCGGCCUGGC-CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.