miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 40574 0.67 0.582197
Target:  5'- cGCUuucugCGCGCU-GCCGGugCGuGUGGCu -3'
miRNA:   3'- aUGA-----GCGCGGuCGGCCugGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 43216 0.67 0.600917
Target:  5'- gACgUCGCGaUCGGCaggCGGGCCGGcuaCGGCg -3'
miRNA:   3'- aUG-AGCGC-GGUCG---GCCUGGCCc--GCCG- -5'
29791 3' -64.6 NC_006273.1 + 43588 0.66 0.657355
Target:  5'- gGCaaGUGCCgcGGCgCGuGuCCGGGUGGCu -3'
miRNA:   3'- aUGagCGCGG--UCG-GC-CuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 45888 0.67 0.554358
Target:  5'- cACagCGCGgCGGCCGGGCCGccgaGGCc -3'
miRNA:   3'- aUGa-GCGCgGUCGGCCUGGCccg-CCG- -5'
29791 3' -64.6 NC_006273.1 + 47153 0.68 0.536016
Target:  5'- gACaCGCGCUggAGCUacaaaugaugcaGGACUGGGUGGUg -3'
miRNA:   3'- aUGaGCGCGG--UCGG------------CCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 48026 0.72 0.312729
Target:  5'- aACagCGUGCCuccGCCGGACauGGCGGUg -3'
miRNA:   3'- aUGa-GCGCGGu--CGGCCUGgcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 56103 0.69 0.485913
Target:  5'- aUGCUCuggcgGCGCC-GCCGGauuucgucgaaacggGCCGcggaGGCGGCg -3'
miRNA:   3'- -AUGAG-----CGCGGuCGGCC---------------UGGC----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 60197 0.68 0.536016
Target:  5'- cUGgUCGCGCCGGCCGGAUUaaaGGU-GCu -3'
miRNA:   3'- -AUgAGCGCGGUCGGCCUGGc--CCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 60233 0.67 0.591544
Target:  5'- cUACUcaCGCGuCCA-CCGcGACUGGGCacGGCg -3'
miRNA:   3'- -AUGA--GCGC-GGUcGGC-CUGGCCCG--CCG- -5'
29791 3' -64.6 NC_006273.1 + 61564 0.66 0.629128
Target:  5'- aUugUCcuCGUCGGCCGGGUCGcGCGGCc -3'
miRNA:   3'- -AugAGc-GCGGUCGGCCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 63166 0.66 0.638543
Target:  5'- -cCUUGCGUCcgucucgcGGCgCGG-CCGGcGCGGCc -3'
miRNA:   3'- auGAGCGCGG--------UCG-GCCuGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 64831 0.69 0.465124
Target:  5'- gAgUCGCGguUCGGCCGGACCGuGcacgcgcucucGCGGCc -3'
miRNA:   3'- aUgAGCGC--GGUCGGCCUGGC-C-----------CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 68215 0.7 0.399422
Target:  5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGCa -3'
miRNA:   3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 73745 0.66 0.629128
Target:  5'- gGCg-GCGgCGGCCGaGGcCCGGcaGCGGCg -3'
miRNA:   3'- aUGagCGCgGUCGGC-CU-GGCC--CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 75255 0.69 0.473731
Target:  5'- gACgaaGCGCUGGCC--GCCGcGGCGGCc -3'
miRNA:   3'- aUGag-CGCGGUCGGccUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 76612 0.71 0.339961
Target:  5'- cGCUaCGCGUCcguGGCCGcGGCCG-GCGGCc -3'
miRNA:   3'- aUGA-GCGCGG---UCGGC-CUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78512 0.67 0.582197
Target:  5'- cUGCg-GCGCCGcCCGGAcaCCGGGCGcCg -3'
miRNA:   3'- -AUGagCGCGGUcGGCCU--GGCCCGCcG- -5'
29791 3' -64.6 NC_006273.1 + 78710 0.66 0.619714
Target:  5'- --aUCGuCGCgGGCCuGcACCaGGCGGCg -3'
miRNA:   3'- augAGC-GCGgUCGGcC-UGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 79946 0.7 0.399422
Target:  5'- aACcCGCGUC-GCCGGGCaC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGGuCGGCCUG-GcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 80374 0.66 0.638543
Target:  5'- cGCUCcaaGCGggAGCgGcGGCCGuGGCGGCg -3'
miRNA:   3'- aUGAG---CGCggUCGgC-CUGGC-CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.