Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 80427 | 0.69 | 0.446482 |
Target: 5'- gGC-CGUGCUGGCCGGauuguugugagaaGCCGagggaaaGGCGGCg -3' miRNA: 3'- aUGaGCGCGGUCGGCC-------------UGGC-------CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 81594 | 0.72 | 0.319379 |
Target: 5'- cGCagGCGgCGGCCGcGGCCGcGGCGGa -3' miRNA: 3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 81738 | 0.67 | 0.600917 |
Target: 5'- cGCUUGCccgaGCCcuGCgCGGAgCCGGGCuGCg -3' miRNA: 3'- aUGAGCG----CGGu-CG-GCCU-GGCCCGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 82131 | 0.66 | 0.610308 |
Target: 5'- cUGCUCuGCGuCCAGaCGGGCCaGGGCcagaaGCa -3' miRNA: 3'- -AUGAG-CGC-GGUCgGCCUGG-CCCGc----CG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 83397 | 0.68 | 0.526924 |
Target: 5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3' miRNA: 3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 85997 | 0.66 | 0.657355 |
Target: 5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3' miRNA: 3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 86566 | 0.66 | 0.628186 |
Target: 5'- --aUCGcCGCCGGCCGGucgcucgcgaaaaGCCGuGGCauugagacgcacGGCg -3' miRNA: 3'- augAGC-GCGGUCGGCC-------------UGGC-CCG------------CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 90026 | 0.66 | 0.657355 |
Target: 5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3' miRNA: 3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 90462 | 0.76 | 0.18364 |
Target: 5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3' miRNA: 3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 93929 | 0.68 | 0.536016 |
Target: 5'- cGCaUGCGCgGGCCaGGACCcgcGGGaGGCg -3' miRNA: 3'- aUGaGCGCGgUCGG-CCUGG---CCCgCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 94072 | 0.7 | 0.407309 |
Target: 5'- cGCgUCGUGCgCAugcGCCGGuauuuuuccACUGGGCGGCc -3' miRNA: 3'- aUG-AGCGCG-GU---CGGCC---------UGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 95017 | 0.68 | 0.517891 |
Target: 5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3' miRNA: 3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 98185 | 0.67 | 0.585932 |
Target: 5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3' miRNA: 3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 102838 | 0.66 | 0.618773 |
Target: 5'- ---gCGCGCCGGCCGcGuccaCGGGCacgcuguugggugGGCa -3' miRNA: 3'- augaGCGCGGUCGGC-Cug--GCCCG-------------CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 103296 | 0.7 | 0.391634 |
Target: 5'- cGCUCcagcagcgGUGCCAGCgCGGGCuCGGGUaGCa -3' miRNA: 3'- aUGAG--------CGCGGUCG-GCCUG-GCCCGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 103776 | 0.7 | 0.423371 |
Target: 5'- aACcgCGCGCguGCCaGGCCGuGCGGUa -3' miRNA: 3'- aUGa-GCGCGguCGGcCUGGCcCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 104121 | 0.66 | 0.657355 |
Target: 5'- cGCggCGCGCgCAcGCCGaGACCcgacGCGGCg -3' miRNA: 3'- aUGa-GCGCG-GU-CGGC-CUGGcc--CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 105862 | 0.66 | 0.629128 |
Target: 5'- gGCgcaGCGCCGGCCauucuCCGGGUcGCg -3' miRNA: 3'- aUGag-CGCGGUCGGccu--GGCCCGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 112250 | 0.68 | 0.517891 |
Target: 5'- gGCUgGCGCgAGgacgugcucaUGGACCGGGUGcGCa -3' miRNA: 3'- aUGAgCGCGgUCg---------GCCUGGCCCGC-CG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 113501 | 0.66 | 0.629128 |
Target: 5'- aUGC-CGUaGCCGGCggCGGGuugcCCGGGgGGCg -3' miRNA: 3'- -AUGaGCG-CGGUCG--GCCU----GGCCCgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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