miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 114896 0.68 0.526924
Target:  5'- cGCUaGCG-CGGCCGGcACCGGuuuCGGCa -3'
miRNA:   3'- aUGAgCGCgGUCGGCC-UGGCCc--GCCG- -5'
29791 3' -64.6 NC_006273.1 + 115477 0.7 0.383945
Target:  5'- ----aGCGUCGGCauaugaaGGGCgCGGGCGGCc -3'
miRNA:   3'- augagCGCGGUCGg------CCUG-GCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 115968 0.71 0.354208
Target:  5'- cAUagGCGCUGGCUGaGA-CGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGGC-CUgGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 117609 0.69 0.448159
Target:  5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3'
miRNA:   3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 118159 0.68 0.517891
Target:  5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 119359 0.67 0.600917
Target:  5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3'
miRNA:   3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 120740 0.69 0.456599
Target:  5'- ---gCGgGCCAggauGCCGGccGCCaGGGCGGCc -3'
miRNA:   3'- augaGCgCGGU----CGGCC--UGG-CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 122803 0.69 0.473731
Target:  5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3'
miRNA:   3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 122984 0.73 0.287183
Target:  5'- -cCUCGUccGCCGcGCCGGAgCGuGGCGGUa -3'
miRNA:   3'- auGAGCG--CGGU-CGGCCUgGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 124841 0.68 0.500015
Target:  5'- ---gCGCGCCAG-CGGuCCGuggaagagcGGCGGCa -3'
miRNA:   3'- augaGCGCGGUCgGCCuGGC---------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 127234 0.68 0.536016
Target:  5'- --gUCGCGCCucgauguuGGCCGGguucaacgguuGCCGGuCGGCc -3'
miRNA:   3'- augAGCGCGG--------UCGGCC-----------UGGCCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 128105 0.69 0.431542
Target:  5'- gGCUCGUG-CAGC---ACCGGGUGGCa -3'
miRNA:   3'- aUGAGCGCgGUCGgccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 131826 0.69 0.465124
Target:  5'- cACUCgGCGaCCAGCCcgcacggccugGGGCUGGcCGGCu -3'
miRNA:   3'- aUGAG-CGC-GGUCGG-----------CCUGGCCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 133476 0.68 0.526924
Target:  5'- gGCggCGUGCaGGCgCGGACgCuGGCGGCg -3'
miRNA:   3'- aUGa-GCGCGgUCG-GCCUG-GcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 137444 0.67 0.581264
Target:  5'- gUGCUCuacgucaCGCCAGacuuggacuuuuaCUGGgugcuGCCGGGCGGCu -3'
miRNA:   3'- -AUGAGc------GCGGUC-------------GGCC-----UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139311 0.69 0.465124
Target:  5'- aGCUCGCGCUGGCuuuccuCGGGCgaguuguaguCGcGGUGGCg -3'
miRNA:   3'- aUGAGCGCGGUCG------GCCUG----------GC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139315 0.7 0.407308
Target:  5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3'
miRNA:   3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140182 0.69 0.482417
Target:  5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3'
miRNA:   3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140592 0.66 0.619714
Target:  5'- cGC-CGCGacccCCAGCCGGAaaaaaaaagcCCGGaGgGGCc -3'
miRNA:   3'- aUGaGCGC----GGUCGGCCU----------GGCC-CgCCG- -5'
29791 3' -64.6 NC_006273.1 + 140757 0.69 0.473731
Target:  5'- gACgagCGCGUCAGCa-GGCCGGGUcgaugacgccGGCg -3'
miRNA:   3'- aUGa--GCGCGGUCGgcCUGGCCCG----------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.