Results 81 - 100 of 135 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 140776 | 0.69 | 0.482417 |
Target: 5'- ---cCGCGgCGGgUGGACCGGGaagcCGGCg -3' miRNA: 3'- augaGCGCgGUCgGCCUGGCCC----GCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 140875 | 0.66 | 0.657355 |
Target: 5'- cGCUCGgGUCcccCCGGGCCGcGGaCGGg -3' miRNA: 3'- aUGAGCgCGGuc-GGCCUGGC-CC-GCCg -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 141075 | 0.67 | 0.600917 |
Target: 5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3' miRNA: 3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 141142 | 0.66 | 0.642309 |
Target: 5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3' miRNA: 3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 143343 | 0.66 | 0.629128 |
Target: 5'- -cCUCauGCGgCuGuuGGACCGGcGCGGUc -3' miRNA: 3'- auGAG--CGCgGuCggCCUGGCC-CGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 143946 | 0.7 | 0.383945 |
Target: 5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3' miRNA: 3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 144422 | 0.69 | 0.482417 |
Target: 5'- cGC-CGCGgCGGCggaCGGuuCGGGUGGCg -3' miRNA: 3'- aUGaGCGCgGUCG---GCCugGCCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 144468 | 0.69 | 0.439806 |
Target: 5'- gGCUCGCGC--GCCGGcgucucGCCGGGCa-- -3' miRNA: 3'- aUGAGCGCGguCGGCC------UGGCCCGccg -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 144648 | 0.67 | 0.563598 |
Target: 5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3' miRNA: 3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 145600 | 0.66 | 0.657355 |
Target: 5'- aGCggGgGCCcgAGCgaCGGuCUGGGCGGCg -3' miRNA: 3'- aUGagCgCGG--UCG--GCCuGGCCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 147557 | 0.69 | 0.473731 |
Target: 5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3' miRNA: 3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 148475 | 1.08 | 0.00104 |
Target: 5'- cUACUCGCGCCAGCCGGACCGGGCGGCc -3' miRNA: 3'- -AUGAGCGCGGUCGGCCUGGCCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 149691 | 0.68 | 0.500015 |
Target: 5'- uUGCUgCGCGCCGGUgGcGACUGGcucuCGGCc -3' miRNA: 3'- -AUGA-GCGCGGUCGgC-CUGGCCc---GCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 151238 | 0.66 | 0.657355 |
Target: 5'- gGC-CGCGCCGcuccucgucuGCCGuGAUcaagCGGcGCGGCg -3' miRNA: 3'- aUGaGCGCGGU----------CGGC-CUG----GCC-CGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 151980 | 0.88 | 0.025198 |
Target: 5'- cGCUCggGCGCC-GCCGGGCCGGGUGGCg -3' miRNA: 3'- aUGAG--CGCGGuCGGCCUGGCCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 152600 | 0.67 | 0.554358 |
Target: 5'- ---cUGCGCCAGCgGGugUGucucGGUGGCc -3' miRNA: 3'- augaGCGCGGUCGgCCugGC----CCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 155763 | 0.69 | 0.473731 |
Target: 5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3' miRNA: 3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 156869 | 0.66 | 0.619714 |
Target: 5'- gACg-GCGCC---CGGuguCCGGGCGGCg -3' miRNA: 3'- aUGagCGCGGucgGCCu--GGCCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 158234 | 0.68 | 0.536016 |
Target: 5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3' miRNA: 3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5' |
|||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 158837 | 0.68 | 0.517891 |
Target: 5'- cACagCGCGCCAcguccucgugcGCCGcGCCGaGCGGCg -3' miRNA: 3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home