miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 189954 0.7 0.391634
Target:  5'- aGCUCGU--CGGCCGGcgUGGGCGGCu -3'
miRNA:   3'- aUGAGCGcgGUCGGCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189875 0.66 0.647955
Target:  5'- ---aCGCGUCGGgCGGaccGCCGGGCaucgccgucGGCu -3'
miRNA:   3'- augaGCGCGGUCgGCC---UGGCCCG---------CCG- -5'
29791 3' -64.6 NC_006273.1 + 189822 0.7 0.423371
Target:  5'- aGCUUGUaccGCCucGGCCacGCCGGGUGGCa -3'
miRNA:   3'- aUGAGCG---CGG--UCGGccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189042 0.67 0.600917
Target:  5'- aGC-CGCGUggugggGGcCCGGACC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGg-----UC-GGCCUGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 187183 0.73 0.287183
Target:  5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3'
miRNA:   3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 185275 0.68 0.517891
Target:  5'- cUGCUCcguGUGUCGGCCgcucaaacgucGGGCCGGcGUGGUg -3'
miRNA:   3'- -AUGAG---CGCGGUCGG-----------CCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 182628 0.67 0.600917
Target:  5'- gGC-CGCGUCuuGGCCGaGGCCGGGgaGGa -3'
miRNA:   3'- aUGaGCGCGG--UCGGC-CUGGCCCg-CCg -5'
29791 3' -64.6 NC_006273.1 + 178801 0.66 0.629128
Target:  5'- cUACcUGaCGUCcaaAGgUGGAUCGGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGG---UCgGCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 176702 0.68 0.500015
Target:  5'- gUGCU-GCGCgAGuuGGugACCGaGGCGGUg -3'
miRNA:   3'- -AUGAgCGCGgUCggCC--UGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 174123 0.68 0.49118
Target:  5'- cGCgCGCGCCgcgcugcaguGGCUGGACCuGGGCccGCa -3'
miRNA:   3'- aUGaGCGCGG----------UCGGCCUGG-CCCGc-CG- -5'
29791 3' -64.6 NC_006273.1 + 172211 0.67 0.600917
Target:  5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3'
miRNA:   3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5'
29791 3' -64.6 NC_006273.1 + 171565 0.66 0.645132
Target:  5'- cACUCGCgGCguGCCGcuGCCGGuggaaggggaagacGCGGUa -3'
miRNA:   3'- aUGAGCG-CGguCGGCc-UGGCC--------------CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 171496 0.66 0.629128
Target:  5'- --aUCGgGCCGGCCcaaaGGAUCGGGaagaGGa -3'
miRNA:   3'- augAGCgCGGUCGG----CCUGGCCCg---CCg -5'
29791 3' -64.6 NC_006273.1 + 162373 0.66 0.638543
Target:  5'- gGCg-GCGCUAGUgGuGGCgGuGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgC-CUGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 161673 0.68 0.536016
Target:  5'- gGgUCgGCGCuCuGCCGG-CUGcGGCGGCa -3'
miRNA:   3'- aUgAG-CGCG-GuCGGCCuGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 158837 0.68 0.517891
Target:  5'- cACagCGCGCCAcguccucgugcGCCGcGCCGaGCGGCg -3'
miRNA:   3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 158234 0.68 0.536016
Target:  5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 156869 0.66 0.619714
Target:  5'- gACg-GCGCC---CGGuguCCGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGucgGCCu--GGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 155763 0.69 0.473731
Target:  5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3'
miRNA:   3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 152600 0.67 0.554358
Target:  5'- ---cUGCGCCAGCgGGugUGucucGGUGGCc -3'
miRNA:   3'- augaGCGCGGUCGgCCugGC----CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.