miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 151980 0.88 0.025198
Target:  5'- cGCUCggGCGCC-GCCGGGCCGGGUGGCg -3'
miRNA:   3'- aUGAG--CGCGGuCGGCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 151238 0.66 0.657355
Target:  5'- gGC-CGCGCCGcuccucgucuGCCGuGAUcaagCGGcGCGGCg -3'
miRNA:   3'- aUGaGCGCGGU----------CGGC-CUG----GCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 149691 0.68 0.500015
Target:  5'- uUGCUgCGCGCCGGUgGcGACUGGcucuCGGCc -3'
miRNA:   3'- -AUGA-GCGCGGUCGgC-CUGGCCc---GCCG- -5'
29791 3' -64.6 NC_006273.1 + 148475 1.08 0.00104
Target:  5'- cUACUCGCGCCAGCCGGACCGGGCGGCc -3'
miRNA:   3'- -AUGAGCGCGGUCGGCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 147557 0.69 0.473731
Target:  5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 145600 0.66 0.657355
Target:  5'- aGCggGgGCCcgAGCgaCGGuCUGGGCGGCg -3'
miRNA:   3'- aUGagCgCGG--UCG--GCCuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 144648 0.67 0.563598
Target:  5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 144468 0.69 0.439806
Target:  5'- gGCUCGCGC--GCCGGcgucucGCCGGGCa-- -3'
miRNA:   3'- aUGAGCGCGguCGGCC------UGGCCCGccg -5'
29791 3' -64.6 NC_006273.1 + 144422 0.69 0.482417
Target:  5'- cGC-CGCGgCGGCggaCGGuuCGGGUGGCg -3'
miRNA:   3'- aUGaGCGCgGUCG---GCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 143946 0.7 0.383945
Target:  5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3'
miRNA:   3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 143343 0.66 0.629128
Target:  5'- -cCUCauGCGgCuGuuGGACCGGcGCGGUc -3'
miRNA:   3'- auGAG--CGCgGuCggCCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 141142 0.66 0.642309
Target:  5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3'
miRNA:   3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 141075 0.67 0.600917
Target:  5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3'
miRNA:   3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5'
29791 3' -64.6 NC_006273.1 + 140875 0.66 0.657355
Target:  5'- cGCUCGgGUCcccCCGGGCCGcGGaCGGg -3'
miRNA:   3'- aUGAGCgCGGuc-GGCCUGGC-CC-GCCg -5'
29791 3' -64.6 NC_006273.1 + 140776 0.69 0.482417
Target:  5'- ---cCGCGgCGGgUGGACCGGGaagcCGGCg -3'
miRNA:   3'- augaGCGCgGUCgGCCUGGCCC----GCCG- -5'
29791 3' -64.6 NC_006273.1 + 140757 0.69 0.473731
Target:  5'- gACgagCGCGUCAGCa-GGCCGGGUcgaugacgccGGCg -3'
miRNA:   3'- aUGa--GCGCGGUCGgcCUGGCCCG----------CCG- -5'
29791 3' -64.6 NC_006273.1 + 140592 0.66 0.619714
Target:  5'- cGC-CGCGacccCCAGCCGGAaaaaaaaagcCCGGaGgGGCc -3'
miRNA:   3'- aUGaGCGC----GGUCGGCCU----------GGCC-CgCCG- -5'
29791 3' -64.6 NC_006273.1 + 140182 0.69 0.482417
Target:  5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3'
miRNA:   3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139315 0.7 0.407308
Target:  5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3'
miRNA:   3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139311 0.69 0.465124
Target:  5'- aGCUCGCGCUGGCuuuccuCGGGCgaguuguaguCGcGGUGGCg -3'
miRNA:   3'- aUGAGCGCGGUCG------GCCUG----------GC-CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.