Results 61 - 80 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 137444 | 0.67 | 0.581264 |
Target: 5'- gUGCUCuacgucaCGCCAGacuuggacuuuuaCUGGgugcuGCCGGGCGGCu -3' miRNA: 3'- -AUGAGc------GCGGUC-------------GGCC-----UGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 133476 | 0.68 | 0.526924 |
Target: 5'- gGCggCGUGCaGGCgCGGACgCuGGCGGCg -3' miRNA: 3'- aUGa-GCGCGgUCG-GCCUG-GcCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 131826 | 0.69 | 0.465124 |
Target: 5'- cACUCgGCGaCCAGCCcgcacggccugGGGCUGGcCGGCu -3' miRNA: 3'- aUGAG-CGC-GGUCGG-----------CCUGGCCcGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 128105 | 0.69 | 0.431542 |
Target: 5'- gGCUCGUG-CAGC---ACCGGGUGGCa -3' miRNA: 3'- aUGAGCGCgGUCGgccUGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 127234 | 0.68 | 0.536016 |
Target: 5'- --gUCGCGCCucgauguuGGCCGGguucaacgguuGCCGGuCGGCc -3' miRNA: 3'- augAGCGCGG--------UCGGCC-----------UGGCCcGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 124841 | 0.68 | 0.500015 |
Target: 5'- ---gCGCGCCAG-CGGuCCGuggaagagcGGCGGCa -3' miRNA: 3'- augaGCGCGGUCgGCCuGGC---------CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 122984 | 0.73 | 0.287183 |
Target: 5'- -cCUCGUccGCCGcGCCGGAgCGuGGCGGUa -3' miRNA: 3'- auGAGCG--CGGU-CGGCCUgGC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 122803 | 0.69 | 0.473731 |
Target: 5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3' miRNA: 3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 120740 | 0.69 | 0.456599 |
Target: 5'- ---gCGgGCCAggauGCCGGccGCCaGGGCGGCc -3' miRNA: 3'- augaGCgCGGU----CGGCC--UGG-CCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 119359 | 0.67 | 0.600917 |
Target: 5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3' miRNA: 3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 118159 | 0.68 | 0.517891 |
Target: 5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3' miRNA: 3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 117609 | 0.69 | 0.448159 |
Target: 5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3' miRNA: 3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 115968 | 0.71 | 0.354208 |
Target: 5'- cAUagGCGCUGGCUGaGA-CGGGCGGCg -3' miRNA: 3'- aUGagCGCGGUCGGC-CUgGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 115477 | 0.7 | 0.383945 |
Target: 5'- ----aGCGUCGGCauaugaaGGGCgCGGGCGGCc -3' miRNA: 3'- augagCGCGGUCGg------CCUG-GCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 114896 | 0.68 | 0.526924 |
Target: 5'- cGCUaGCG-CGGCCGGcACCGGuuuCGGCa -3' miRNA: 3'- aUGAgCGCgGUCGGCC-UGGCCc--GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 113501 | 0.66 | 0.629128 |
Target: 5'- aUGC-CGUaGCCGGCggCGGGuugcCCGGGgGGCg -3' miRNA: 3'- -AUGaGCG-CGGUCG--GCCU----GGCCCgCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 112250 | 0.68 | 0.517891 |
Target: 5'- gGCUgGCGCgAGgacgugcucaUGGACCGGGUGcGCa -3' miRNA: 3'- aUGAgCGCGgUCg---------GCCUGGCCCGC-CG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 105862 | 0.66 | 0.629128 |
Target: 5'- gGCgcaGCGCCGGCCauucuCCGGGUcGCg -3' miRNA: 3'- aUGag-CGCGGUCGGccu--GGCCCGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 104121 | 0.66 | 0.657355 |
Target: 5'- cGCggCGCGCgCAcGCCGaGACCcgacGCGGCg -3' miRNA: 3'- aUGa-GCGCG-GU-CGGC-CUGGcc--CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 103776 | 0.7 | 0.423371 |
Target: 5'- aACcgCGCGCguGCCaGGCCGuGCGGUa -3' miRNA: 3'- aUGa-GCGCGguCGGcCUGGCcCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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