miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 103296 0.7 0.391634
Target:  5'- cGCUCcagcagcgGUGCCAGCgCGGGCuCGGGUaGCa -3'
miRNA:   3'- aUGAG--------CGCGGUCG-GCCUG-GCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 102838 0.66 0.618773
Target:  5'- ---gCGCGCCGGCCGcGuccaCGGGCacgcuguugggugGGCa -3'
miRNA:   3'- augaGCGCGGUCGGC-Cug--GCCCG-------------CCG- -5'
29791 3' -64.6 NC_006273.1 + 98185 0.67 0.585932
Target:  5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3'
miRNA:   3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 95017 0.68 0.517891
Target:  5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3'
miRNA:   3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 94072 0.7 0.407309
Target:  5'- cGCgUCGUGCgCAugcGCCGGuauuuuuccACUGGGCGGCc -3'
miRNA:   3'- aUG-AGCGCG-GU---CGGCC---------UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 93929 0.68 0.536016
Target:  5'- cGCaUGCGCgGGCCaGGACCcgcGGGaGGCg -3'
miRNA:   3'- aUGaGCGCGgUCGG-CCUGG---CCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 90462 0.76 0.18364
Target:  5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3'
miRNA:   3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 90026 0.66 0.657355
Target:  5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3'
miRNA:   3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5'
29791 3' -64.6 NC_006273.1 + 86566 0.66 0.628186
Target:  5'- --aUCGcCGCCGGCCGGucgcucgcgaaaaGCCGuGGCauugagacgcacGGCg -3'
miRNA:   3'- augAGC-GCGGUCGGCC-------------UGGC-CCG------------CCG- -5'
29791 3' -64.6 NC_006273.1 + 85997 0.66 0.657355
Target:  5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3'
miRNA:   3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5'
29791 3' -64.6 NC_006273.1 + 83397 0.68 0.526924
Target:  5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 82131 0.66 0.610308
Target:  5'- cUGCUCuGCGuCCAGaCGGGCCaGGGCcagaaGCa -3'
miRNA:   3'- -AUGAG-CGC-GGUCgGCCUGG-CCCGc----CG- -5'
29791 3' -64.6 NC_006273.1 + 81738 0.67 0.600917
Target:  5'- cGCUUGCccgaGCCcuGCgCGGAgCCGGGCuGCg -3'
miRNA:   3'- aUGAGCG----CGGu-CG-GCCU-GGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 81594 0.72 0.319379
Target:  5'- cGCagGCGgCGGCCGcGGCCGcGGCGGa -3'
miRNA:   3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5'
29791 3' -64.6 NC_006273.1 + 80427 0.69 0.446482
Target:  5'- gGC-CGUGCUGGCCGGauuguugugagaaGCCGagggaaaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCC-------------UGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 80374 0.66 0.638543
Target:  5'- cGCUCcaaGCGggAGCgGcGGCCGuGGCGGCg -3'
miRNA:   3'- aUGAG---CGCggUCGgC-CUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 79946 0.7 0.399422
Target:  5'- aACcCGCGUC-GCCGGGCaC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGGuCGGCCUG-GcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78710 0.66 0.619714
Target:  5'- --aUCGuCGCgGGCCuGcACCaGGCGGCg -3'
miRNA:   3'- augAGC-GCGgUCGGcC-UGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78512 0.67 0.582197
Target:  5'- cUGCg-GCGCCGcCCGGAcaCCGGGCGcCg -3'
miRNA:   3'- -AUGagCGCGGUcGGCCU--GGCCCGCcG- -5'
29791 3' -64.6 NC_006273.1 + 76612 0.71 0.339961
Target:  5'- cGCUaCGCGUCcguGGCCGcGGCCG-GCGGCc -3'
miRNA:   3'- aUGA-GCGCGG---UCGGC-CUGGCcCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.