miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 139311 0.69 0.465124
Target:  5'- aGCUCGCGCUGGCuuuccuCGGGCgaguuguaguCGcGGUGGCg -3'
miRNA:   3'- aUGAGCGCGGUCG------GCCUG----------GC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 103776 0.7 0.423371
Target:  5'- aACcgCGCGCguGCCaGGCCGuGCGGUa -3'
miRNA:   3'- aUGa-GCGCGguCGGcCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189822 0.7 0.423371
Target:  5'- aGCUUGUaccGCCucGGCCacGCCGGGUGGCa -3'
miRNA:   3'- aUGAGCG---CGG--UCGGccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 128105 0.69 0.431542
Target:  5'- gGCUCGUG-CAGC---ACCGGGUGGCa -3'
miRNA:   3'- aUGAGCGCgGUCGgccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 144468 0.69 0.439806
Target:  5'- gGCUCGCGC--GCCGGcgucucGCCGGGCa-- -3'
miRNA:   3'- aUGAGCGCGguCGGCC------UGGCCCGccg -5'
29791 3' -64.6 NC_006273.1 + 80427 0.69 0.446482
Target:  5'- gGC-CGUGCUGGCCGGauuguugugagaaGCCGagggaaaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCC-------------UGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 120740 0.69 0.456599
Target:  5'- ---gCGgGCCAggauGCCGGccGCCaGGGCGGCc -3'
miRNA:   3'- augaGCgCGGU----CGGCC--UGG-CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 229863 0.69 0.465124
Target:  5'- cACgCGgGCUgAGCCGGACCGcGUGGUg -3'
miRNA:   3'- aUGaGCgCGG-UCGGCCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 64831 0.69 0.465124
Target:  5'- gAgUCGCGguUCGGCCGGACCGuGcacgcgcucucGCGGCc -3'
miRNA:   3'- aUgAGCGC--GGUCGGCCUGGC-C-----------CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 94072 0.7 0.407309
Target:  5'- cGCgUCGUGCgCAugcGCCGGuauuuuuccACUGGGCGGCc -3'
miRNA:   3'- aUG-AGCGCG-GU---CGGCC---------UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 79946 0.7 0.399422
Target:  5'- aACcCGCGUC-GCCGGGCaC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGGuCGGCCUG-GcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 103296 0.7 0.391634
Target:  5'- cGCUCcagcagcgGUGCCAGCgCGGGCuCGGGUaGCa -3'
miRNA:   3'- aUGAG--------CGCGGUCG-GCCUG-GCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 210005 0.74 0.220424
Target:  5'- cUGCggGuCGCCAGCCGGGucucuuggaucCCGGGgGGCa -3'
miRNA:   3'- -AUGagC-GCGGUCGGCCU-----------GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 34507 0.73 0.251989
Target:  5'- gGCgUUGaGCCAGCgaaaaugcugCGGAUCGGGCGGCa -3'
miRNA:   3'- aUG-AGCgCGGUCG----------GCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 122984 0.73 0.287183
Target:  5'- -cCUCGUccGCCGcGCCGGAgCGuGGCGGUa -3'
miRNA:   3'- auGAGCG--CGGU-CGGCCUgGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 115968 0.71 0.354208
Target:  5'- cAUagGCGCUGGCUGaGA-CGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGGC-CUgGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 196629 0.71 0.375604
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCa -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 232951 0.71 0.376357
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 115477 0.7 0.383945
Target:  5'- ----aGCGUCGGCauaugaaGGGCgCGGGCGGCc -3'
miRNA:   3'- augagCGCGGUCGg------CCUG-GCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 39152 0.7 0.383945
Target:  5'- ---aCGaCGCCgggaaAGCCGGGCUGcGGCGGUg -3'
miRNA:   3'- augaGC-GCGG-----UCGGCCUGGC-CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.