miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 196629 0.71 0.375604
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCa -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 115968 0.71 0.354208
Target:  5'- cAUagGCGCUGGCUGaGA-CGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGGC-CUgGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 122984 0.73 0.287183
Target:  5'- -cCUCGUccGCCGcGCCGGAgCGuGGCGGUa -3'
miRNA:   3'- auGAGCG--CGGU-CGGCCUgGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 34507 0.73 0.251989
Target:  5'- gGCgUUGaGCCAGCgaaaaugcugCGGAUCGGGCGGCa -3'
miRNA:   3'- aUG-AGCgCGGUCG----------GCCUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 210005 0.74 0.220424
Target:  5'- cUGCggGuCGCCAGCCGGGucucuuggaucCCGGGgGGCa -3'
miRNA:   3'- -AUGagC-GCGGUCGGCCU-----------GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 128105 0.69 0.431542
Target:  5'- gGCUCGUG-CAGC---ACCGGGUGGCa -3'
miRNA:   3'- aUGAGCGCgGUCGgccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 144468 0.69 0.439806
Target:  5'- gGCUCGCGC--GCCGGcgucucGCCGGGCa-- -3'
miRNA:   3'- aUGAGCGCGguCGGCC------UGGCCCGccg -5'
29791 3' -64.6 NC_006273.1 + 95017 0.68 0.517891
Target:  5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3'
miRNA:   3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 197294 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 149691 0.68 0.500015
Target:  5'- uUGCUgCGCGCCGGUgGcGACUGGcucuCGGCc -3'
miRNA:   3'- -AUGA-GCGCGGUCGgC-CUGGCCc---GCCG- -5'
29791 3' -64.6 NC_006273.1 + 124841 0.68 0.500015
Target:  5'- ---gCGCGCCAG-CGGuCCGuggaagagcGGCGGCa -3'
miRNA:   3'- augaGCGCGGUCgGCCuGGC---------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 56103 0.69 0.485913
Target:  5'- aUGCUCuggcgGCGCC-GCCGGauuucgucgaaacggGCCGcggaGGCGGCg -3'
miRNA:   3'- -AUGAG-----CGCGGuCGGCC---------------UGGC----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 144422 0.69 0.482417
Target:  5'- cGC-CGCGgCGGCggaCGGuuCGGGUGGCg -3'
miRNA:   3'- aUGaGCGCgGUCG---GCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140757 0.69 0.473731
Target:  5'- gACgagCGCGUCAGCa-GGCCGGGUcgaugacgccGGCg -3'
miRNA:   3'- aUGa--GCGCGGUCGgcCUGGCCCG----------CCG- -5'
29791 3' -64.6 NC_006273.1 + 75255 0.69 0.473731
Target:  5'- gACgaaGCGCUGGCC--GCCGcGGCGGCc -3'
miRNA:   3'- aUGag-CGCGGUCGGccUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139311 0.69 0.465124
Target:  5'- aGCUCGCGCUGGCuuuccuCGGGCgaguuguaguCGcGGUGGCg -3'
miRNA:   3'- aUGAGCGCGGUCG------GCCUG----------GC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 64831 0.69 0.465124
Target:  5'- gAgUCGCGguUCGGCCGGACCGuGcacgcgcucucGCGGCc -3'
miRNA:   3'- aUgAGCGC--GGUCGGCCUGGC-C-----------CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 229863 0.69 0.465124
Target:  5'- cACgCGgGCUgAGCCGGACCGcGUGGUg -3'
miRNA:   3'- aUGaGCgCGG-UCGGCCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 120740 0.69 0.456599
Target:  5'- ---gCGgGCCAggauGCCGGccGCCaGGGCGGCc -3'
miRNA:   3'- augaGCgCGGU----CGGCC--UGG-CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 80427 0.69 0.446482
Target:  5'- gGC-CGUGCUGGCCGGauuguugugagaaGCCGagggaaaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCC-------------UGGC-------CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.