miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 30673 0.68 0.517891
Target:  5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3'
miRNA:   3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 118159 0.68 0.517891
Target:  5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 158837 0.68 0.517891
Target:  5'- cACagCGCGCCAcguccucgugcGCCGcGCCGaGCGGCg -3'
miRNA:   3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 83397 0.68 0.526924
Target:  5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 215901 0.69 0.439806
Target:  5'- cGC-CGCGCCAGCUGG-CaCGGaGuUGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuG-GCC-C-GCCG- -5'
29791 3' -64.6 NC_006273.1 + 31741 0.7 0.423371
Target:  5'- gGCUCGgGUCGGCUGG-UCGGGCcgucGCg -3'
miRNA:   3'- aUGAGCgCGGUCGGCCuGGCCCGc---CG- -5'
29791 3' -64.6 NC_006273.1 + 139315 0.7 0.407308
Target:  5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3'
miRNA:   3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 90462 0.76 0.18364
Target:  5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3'
miRNA:   3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 8214 0.74 0.246481
Target:  5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3'
miRNA:   3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5'
29791 3' -64.6 NC_006273.1 + 190131 0.73 0.251989
Target:  5'- uUGCggCGCGagCAGCC--GCCGGGCGGCa -3'
miRNA:   3'- -AUGa-GCGCg-GUCGGccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 187183 0.73 0.287183
Target:  5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3'
miRNA:   3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 13560 0.72 0.312729
Target:  5'- aUACg-GCGCaacGCCGGgugcucacccGCCGGGCGGCc -3'
miRNA:   3'- -AUGagCGCGgu-CGGCC----------UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 48026 0.72 0.312729
Target:  5'- aACagCGUGCCuccGCCGGACauGGCGGUg -3'
miRNA:   3'- aUGa-GCGCGGu--CGGCCUGgcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 81594 0.72 0.319379
Target:  5'- cGCagGCGgCGGCCGcGGCCGcGGCGGa -3'
miRNA:   3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5'
29791 3' -64.6 NC_006273.1 + 76612 0.71 0.339961
Target:  5'- cGCUaCGCGUCcguGGCCGcGGCCG-GCGGCc -3'
miRNA:   3'- aUGA-GCGCGG---UCGGC-CUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 1737 0.71 0.375604
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCa -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38058 0.71 0.376357
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 143946 0.7 0.383945
Target:  5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3'
miRNA:   3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189954 0.7 0.391634
Target:  5'- aGCUCGU--CGGCCGGcgUGGGCGGCu -3'
miRNA:   3'- aUGAGCGcgGUCGGCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 68215 0.7 0.399422
Target:  5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGCa -3'
miRNA:   3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.