Results 101 - 120 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 81594 | 0.72 | 0.319379 |
Target: 5'- cGCagGCGgCGGCCGcGGCCGcGGCGGa -3' miRNA: 3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 48026 | 0.72 | 0.312729 |
Target: 5'- aACagCGUGCCuccGCCGGACauGGCGGUg -3' miRNA: 3'- aUGa-GCGCGGu--CGGCCUGgcCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 13560 | 0.72 | 0.312729 |
Target: 5'- aUACg-GCGCaacGCCGGgugcucacccGCCGGGCGGCc -3' miRNA: 3'- -AUGagCGCGgu-CGGCC----------UGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 187183 | 0.73 | 0.287183 |
Target: 5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3' miRNA: 3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 190131 | 0.73 | 0.251989 |
Target: 5'- uUGCggCGCGagCAGCC--GCCGGGCGGCa -3' miRNA: 3'- -AUGa-GCGCg-GUCGGccUGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 8214 | 0.74 | 0.246481 |
Target: 5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3' miRNA: 3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 90462 | 0.76 | 0.18364 |
Target: 5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3' miRNA: 3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 143946 | 0.7 | 0.383945 |
Target: 5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3' miRNA: 3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 189954 | 0.7 | 0.391634 |
Target: 5'- aGCUCGU--CGGCCGGcgUGGGCGGCu -3' miRNA: 3'- aUGAGCGcgGUCGGCCugGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 68215 | 0.7 | 0.399422 |
Target: 5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGCa -3' miRNA: 3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 140776 | 0.69 | 0.482417 |
Target: 5'- ---cCGCGgCGGgUGGACCGGGaagcCGGCg -3' miRNA: 3'- augaGCGCgGUCgGCCUGGCCC----GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 140182 | 0.69 | 0.482417 |
Target: 5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3' miRNA: 3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 155763 | 0.69 | 0.473731 |
Target: 5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3' miRNA: 3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 147557 | 0.69 | 0.473731 |
Target: 5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3' miRNA: 3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 122803 | 0.69 | 0.473731 |
Target: 5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3' miRNA: 3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 131826 | 0.69 | 0.465124 |
Target: 5'- cACUCgGCGaCCAGCCcgcacggccugGGGCUGGcCGGCu -3' miRNA: 3'- aUGAG-CGC-GGUCGG-----------CCUGGCCcGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 117609 | 0.69 | 0.448159 |
Target: 5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3' miRNA: 3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 215901 | 0.69 | 0.439806 |
Target: 5'- cGC-CGCGCCAGCUGG-CaCGGaGuUGGCg -3' miRNA: 3'- aUGaGCGCGGUCGGCCuG-GCC-C-GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 31741 | 0.7 | 0.423371 |
Target: 5'- gGCUCGgGUCGGCUGG-UCGGGCcgucGCg -3' miRNA: 3'- aUGAGCgCGGUCGGCCuGGCCCGc---CG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 139315 | 0.7 | 0.407308 |
Target: 5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3' miRNA: 3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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