Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 140182 | 0.69 | 0.482417 |
Target: 5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3' miRNA: 3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 122803 | 0.69 | 0.473731 |
Target: 5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3' miRNA: 3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 38058 | 0.71 | 0.376357 |
Target: 5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3' miRNA: 3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 190131 | 0.73 | 0.251989 |
Target: 5'- uUGCggCGCGagCAGCC--GCCGGGCGGCa -3' miRNA: 3'- -AUGa-GCGCg-GUCGGccUGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 198302 | 0.67 | 0.582197 |
Target: 5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3' miRNA: 3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 30673 | 0.68 | 0.517891 |
Target: 5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3' miRNA: 3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 117609 | 0.69 | 0.448159 |
Target: 5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3' miRNA: 3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 8214 | 0.74 | 0.246481 |
Target: 5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3' miRNA: 3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 2401 | 0.68 | 0.500015 |
Target: 5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3' miRNA: 3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 90462 | 0.76 | 0.18364 |
Target: 5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3' miRNA: 3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 131826 | 0.69 | 0.465124 |
Target: 5'- cACUCgGCGaCCAGCCcgcacggccugGGGCUGGcCGGCu -3' miRNA: 3'- aUGAG-CGC-GGUCGG-----------CCUGGCCcGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 140776 | 0.69 | 0.482417 |
Target: 5'- ---cCGCGgCGGgUGGACCGGGaagcCGGCg -3' miRNA: 3'- augaGCGCgGUCgGCCUGGCCC----GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 139315 | 0.7 | 0.407308 |
Target: 5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3' miRNA: 3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 143946 | 0.7 | 0.383945 |
Target: 5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3' miRNA: 3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 81594 | 0.72 | 0.319379 |
Target: 5'- cGCagGCGgCGGCCGcGGCCGcGGCGGa -3' miRNA: 3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 187183 | 0.73 | 0.287183 |
Target: 5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3' miRNA: 3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 199892 | 0.67 | 0.591544 |
Target: 5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3' miRNA: 3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 212164 | 0.67 | 0.582197 |
Target: 5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3' miRNA: 3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 158234 | 0.68 | 0.536016 |
Target: 5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3' miRNA: 3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 118159 | 0.68 | 0.517891 |
Target: 5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3' miRNA: 3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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