miRNA display CGI


Results 41 - 60 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 144648 0.67 0.563598
Target:  5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 117609 0.69 0.448159
Target:  5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3'
miRNA:   3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 8214 0.74 0.246481
Target:  5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3'
miRNA:   3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5'
29791 3' -64.6 NC_006273.1 + 18523 0.67 0.551594
Target:  5'- gGCcugCGCGCCuGCCGGccuuuugaccacauGCCGGccGCGGa -3'
miRNA:   3'- aUGa--GCGCGGuCGGCC--------------UGGCC--CGCCg -5'
29791 3' -64.6 NC_006273.1 + 90462 0.76 0.18364
Target:  5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3'
miRNA:   3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 141142 0.66 0.642309
Target:  5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3'
miRNA:   3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 187183 0.73 0.287183
Target:  5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3'
miRNA:   3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 194870 0.66 0.629128
Target:  5'- aGCgguagCGCGCCGGgucgccuguCCGGcagcaGCCGGGCcGCc -3'
miRNA:   3'- aUGa----GCGCGGUC---------GGCC-----UGGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 105862 0.66 0.629128
Target:  5'- gGCgcaGCGCCGGCCauucuCCGGGUcGCg -3'
miRNA:   3'- aUGag-CGCGGUCGGccu--GGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 233658 0.66 0.618773
Target:  5'- cGCUUGCGCU-GUCGGcccagucgccaccGCCGcGGCGGa -3'
miRNA:   3'- aUGAGCGCGGuCGGCC-------------UGGC-CCGCCg -5'
29791 3' -64.6 NC_006273.1 + 172211 0.67 0.600917
Target:  5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3'
miRNA:   3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5'
29791 3' -64.6 NC_006273.1 + 199892 0.67 0.591544
Target:  5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3'
miRNA:   3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 212164 0.67 0.582197
Target:  5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3'
miRNA:   3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 158837 0.68 0.517891
Target:  5'- cACagCGCGCCAcguccucgugcGCCGcGCCGaGCGGCg -3'
miRNA:   3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 2401 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140182 0.69 0.482417
Target:  5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3'
miRNA:   3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 122803 0.69 0.473731
Target:  5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3'
miRNA:   3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 139315 0.7 0.407308
Target:  5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3'
miRNA:   3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 143946 0.7 0.383945
Target:  5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3'
miRNA:   3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 81594 0.72 0.319379
Target:  5'- cGCagGCGgCGGCCGcGGCCGcGGCGGa -3'
miRNA:   3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.