miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 122803 0.69 0.473731
Target:  5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3'
miRNA:   3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140776 0.69 0.482417
Target:  5'- ---cCGCGgCGGgUGGACCGGGaagcCGGCg -3'
miRNA:   3'- augaGCGCgGUCgGCCUGGCCC----GCCG- -5'
29791 3' -64.6 NC_006273.1 + 2401 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 140592 0.66 0.619714
Target:  5'- cGC-CGCGacccCCAGCCGGAaaaaaaaagcCCGGaGgGGCc -3'
miRNA:   3'- aUGaGCGC----GGUCGGCCU----------GGCC-CgCCG- -5'
29791 3' -64.6 NC_006273.1 + 196972 0.66 0.610308
Target:  5'- cGCUCGuCGCUguuGCCGccACCGcagcGGCGGCg -3'
miRNA:   3'- aUGAGC-GCGGu--CGGCc-UGGC----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 143343 0.66 0.629128
Target:  5'- -cCUCauGCGgCuGuuGGACCGGcGCGGUc -3'
miRNA:   3'- auGAG--CGCgGuCggCCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78710 0.66 0.619714
Target:  5'- --aUCGuCGCgGGCCuGcACCaGGCGGCg -3'
miRNA:   3'- augAGC-GCGgUCGGcC-UGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 73745 0.66 0.629128
Target:  5'- gGCg-GCGgCGGCCGaGGcCCGGcaGCGGCg -3'
miRNA:   3'- aUGagCGCgGUCGGC-CU-GGCC--CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 37298 0.66 0.629128
Target:  5'- -cCUUGCGaCGGCCGGACauGcCGGCa -3'
miRNA:   3'- auGAGCGCgGUCGGCCUGgcCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 61564 0.66 0.629128
Target:  5'- aUugUCcuCGUCGGCCGGGUCGcGCGGCc -3'
miRNA:   3'- -AugAGc-GCGGUCGGCCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 185275 0.68 0.517891
Target:  5'- cUGCUCcguGUGUCGGCCgcucaaacgucGGGCCGGcGUGGUg -3'
miRNA:   3'- -AUGAG---CGCGGUCGG-----------CCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 171496 0.66 0.629128
Target:  5'- --aUCGgGCCGGCCcaaaGGAUCGGGaagaGGa -3'
miRNA:   3'- augAGCgCGGUCGG----CCUGGCCCg---CCg -5'
29791 3' -64.6 NC_006273.1 + 232951 0.71 0.376357
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 95017 0.68 0.517891
Target:  5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3'
miRNA:   3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 197294 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 113501 0.66 0.629128
Target:  5'- aUGC-CGUaGCCGGCggCGGGuugcCCGGGgGGCg -3'
miRNA:   3'- -AUGaGCG-CGGUCG--GCCU----GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 112250 0.68 0.517891
Target:  5'- gGCUgGCGCgAGgacgugcucaUGGACCGGGUGcGCa -3'
miRNA:   3'- aUGAgCGCGgUCg---------GCCUGGCCCGC-CG- -5'
29791 3' -64.6 NC_006273.1 + 162373 0.66 0.638543
Target:  5'- gGCg-GCGCUAGUgGuGGCgGuGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgC-CUGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189822 0.7 0.423371
Target:  5'- aGCUUGUaccGCCucGGCCacGCCGGGUGGCa -3'
miRNA:   3'- aUGAGCG---CGG--UCGGccUGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 128105 0.69 0.431542
Target:  5'- gGCUCGUG-CAGC---ACCGGGUGGCa -3'
miRNA:   3'- aUGAGCGCgGUCGgccUGGCCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.