miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 232951 0.71 0.376357
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 196629 0.71 0.375604
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCa -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 213883 0.67 0.582197
Target:  5'- cGCUCGCauaGCuCGGCC--ACCGguGGCGGCa -3'
miRNA:   3'- aUGAGCG---CG-GUCGGccUGGC--CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 636 0.67 0.582197
Target:  5'- cGCUuucugCGCGCU-GCCGGugCGuGUGGCu -3'
miRNA:   3'- aUGA-----GCGCGGuCGGCCugGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 34168 0.67 0.591544
Target:  5'- gGCUCGCGCCauaaacguGGCgUGGAaaaaaacGGCGGCg -3'
miRNA:   3'- aUGAGCGCGG--------UCG-GCCUggc----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 113501 0.66 0.629128
Target:  5'- aUGC-CGUaGCCGGCggCGGGuugcCCGGGgGGCg -3'
miRNA:   3'- -AUGaGCG-CGGUCG--GCCU----GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 232886 0.66 0.629128
Target:  5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3'
miRNA:   3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5'
29791 3' -64.6 NC_006273.1 + 171496 0.66 0.629128
Target:  5'- --aUCGgGCCGGCCcaaaGGAUCGGGaagaGGa -3'
miRNA:   3'- augAGCgCGGUCGG----CCUGGCCCg---CCg -5'
29791 3' -64.6 NC_006273.1 + 143343 0.66 0.629128
Target:  5'- -cCUCauGCGgCuGuuGGACCGGcGCGGUc -3'
miRNA:   3'- auGAG--CGCgGuCggCCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 61564 0.66 0.629128
Target:  5'- aUugUCcuCGUCGGCCGGGUCGcGCGGCc -3'
miRNA:   3'- -AugAGc-GCGGUCGGCCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 37298 0.66 0.629128
Target:  5'- -cCUUGCGaCGGCCGGACauGcCGGCa -3'
miRNA:   3'- auGAGCGCgGUCGGCCUGgcCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 73745 0.66 0.629128
Target:  5'- gGCg-GCGgCGGCCGaGGcCCGGcaGCGGCg -3'
miRNA:   3'- aUGagCGCgGUCGGC-CU-GGCC--CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 78710 0.66 0.619714
Target:  5'- --aUCGuCGCgGGCCuGcACCaGGCGGCg -3'
miRNA:   3'- augAGC-GCGgUCGGcC-UGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 102838 0.66 0.618773
Target:  5'- ---gCGCGCCGGCCGcGuccaCGGGCacgcuguugggugGGCa -3'
miRNA:   3'- augaGCGCGGUCGGC-Cug--GCCCG-------------CCG- -5'
29791 3' -64.6 NC_006273.1 + 216201 0.66 0.614069
Target:  5'- aAUUCGaCGCCgcauucguuguacggAGCgCGGcACaUGGGCGGCg -3'
miRNA:   3'- aUGAGC-GCGG---------------UCG-GCC-UG-GCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 82131 0.66 0.610308
Target:  5'- cUGCUCuGCGuCCAGaCGGGCCaGGGCcagaaGCa -3'
miRNA:   3'- -AUGAG-CGC-GGUCgGCCUGG-CCCGc----CG- -5'
29791 3' -64.6 NC_006273.1 + 189042 0.67 0.600917
Target:  5'- aGC-CGCGUggugggGGcCCGGACC-GGCGGCg -3'
miRNA:   3'- aUGaGCGCGg-----UC-GGCCUGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 81738 0.67 0.600917
Target:  5'- cGCUUGCccgaGCCcuGCgCGGAgCCGGGCuGCg -3'
miRNA:   3'- aUGAGCG----CGGu-CG-GCCU-GGCCCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 38136 0.67 0.591544
Target:  5'- cGCUCGgGCCGG-CGaGGCCGacGCGGUu -3'
miRNA:   3'- aUGAGCgCGGUCgGC-CUGGCc-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 60233 0.67 0.591544
Target:  5'- cUACUcaCGCGuCCA-CCGcGACUGGGCacGGCg -3'
miRNA:   3'- -AUGA--GCGC-GGUcGGC-CUGGCCCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.