miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 5' -53 NC_006273.1 + 86388 0.66 0.994453
Target:  5'- -cGCC-UCCUCCGccuccUGGAUguaGCUGUg -3'
miRNA:   3'- caUGGcAGGAGGCaa---ACCUAg--CGACG- -5'
29791 5' -53 NC_006273.1 + 140631 0.66 0.993615
Target:  5'- -aGCUGUacgUCUuuGUUUGGuAUCGCgGCu -3'
miRNA:   3'- caUGGCA---GGAggCAAACC-UAGCGaCG- -5'
29791 5' -53 NC_006273.1 + 94565 0.66 0.992677
Target:  5'- --cCCGggCUCCGgcccgGGAucccUCGCUGCu -3'
miRNA:   3'- cauGGCagGAGGCaaa--CCU----AGCGACG- -5'
29791 5' -53 NC_006273.1 + 181670 0.66 0.992376
Target:  5'- aGUGCCGUCUcgggUCCGUgcacacaacaGCUGCa -3'
miRNA:   3'- -CAUGGCAGG----AGGCAaaccuag---CGACG- -5'
29791 5' -53 NC_006273.1 + 137098 0.66 0.990476
Target:  5'- uUGCCGUCaugccuuggcgCUCUGgaUGGAUCGg-GCg -3'
miRNA:   3'- cAUGGCAG-----------GAGGCaaACCUAGCgaCG- -5'
29791 5' -53 NC_006273.1 + 19898 0.66 0.990476
Target:  5'- -cGCCG-CUUUgGUcUGGAUCGCUcccGCa -3'
miRNA:   3'- caUGGCaGGAGgCAaACCUAGCGA---CG- -5'
29791 5' -53 NC_006273.1 + 105214 0.66 0.990476
Target:  5'- uUGCCuguUCCUCgGUUUcGGAcUCGCUGa -3'
miRNA:   3'- cAUGGc--AGGAGgCAAA-CCU-AGCGACg -5'
29791 5' -53 NC_006273.1 + 132167 0.66 0.990476
Target:  5'- -cGCCGUggCCUCCGaaaccUGGcAUCGCaGCc -3'
miRNA:   3'- caUGGCA--GGAGGCaa---ACC-UAGCGaCG- -5'
29791 5' -53 NC_006273.1 + 14598 0.66 0.990476
Target:  5'- uUGCCGcgagCCgcugacgCCGUUgGGAUaCGCUGUu -3'
miRNA:   3'- cAUGGCa---GGa------GGCAAaCCUA-GCGACG- -5'
29791 5' -53 NC_006273.1 + 215160 0.66 0.989195
Target:  5'- -cGCCGUCUUUCGUgcc-GUCGCcGCa -3'
miRNA:   3'- caUGGCAGGAGGCAaaccUAGCGaCG- -5'
29791 5' -53 NC_006273.1 + 72346 0.67 0.98454
Target:  5'- -cACCGUCUcgcCCGcgcugUGGG-CGCUGCu -3'
miRNA:   3'- caUGGCAGGa--GGCaa---ACCUaGCGACG- -5'
29791 5' -53 NC_006273.1 + 68199 0.67 0.982691
Target:  5'- -cGCCGgCCUCCGc--GGc-CGCUGCg -3'
miRNA:   3'- caUGGCaGGAGGCaaaCCuaGCGACG- -5'
29791 5' -53 NC_006273.1 + 147226 0.68 0.978498
Target:  5'- uGUGCUcUUCUUCGU--GGAUgGCUGCg -3'
miRNA:   3'- -CAUGGcAGGAGGCAaaCCUAgCGACG- -5'
29791 5' -53 NC_006273.1 + 23559 0.68 0.978498
Target:  5'- gGUGCCcaCCaUCUGUUUGGcccUGCUGCa -3'
miRNA:   3'- -CAUGGcaGG-AGGCAAACCua-GCGACG- -5'
29791 5' -53 NC_006273.1 + 5860 0.68 0.973598
Target:  5'- -gGCgGcCCUCCGUUcggcucgggucgUGGGUCGUcGCu -3'
miRNA:   3'- caUGgCaGGAGGCAA------------ACCUAGCGaCG- -5'
29791 5' -53 NC_006273.1 + 187766 0.68 0.970865
Target:  5'- -gACCGUCCUCUGUccGGAUCu---- -3'
miRNA:   3'- caUGGCAGGAGGCAaaCCUAGcgacg -5'
29791 5' -53 NC_006273.1 + 93191 0.69 0.964801
Target:  5'- -cGCCGcUCacgcugUCCGag-GGGUCGCUGCc -3'
miRNA:   3'- caUGGC-AGg-----AGGCaaaCCUAGCGACG- -5'
29791 5' -53 NC_006273.1 + 215026 0.69 0.957904
Target:  5'- -gACCGUCgUCUGagcagugUGGG-CGCUGCc -3'
miRNA:   3'- caUGGCAGgAGGCaa-----ACCUaGCGACG- -5'
29791 5' -53 NC_006273.1 + 122407 0.69 0.95413
Target:  5'- -cGCCGUCacggagUCCGgc-GGAUCGCgGCc -3'
miRNA:   3'- caUGGCAGg-----AGGCaaaCCUAGCGaCG- -5'
29791 5' -53 NC_006273.1 + 25786 0.69 0.950134
Target:  5'- cGUACCGUCCgCCGUca-GAUCGUggucauccaUGCu -3'
miRNA:   3'- -CAUGGCAGGaGGCAaacCUAGCG---------ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.