miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 34254 0.66 0.982665
Target:  5'- --uAAUCCGCaccuGUCGUCGAC-AUGUCGc -3'
miRNA:   3'- gucUUGGGCG----CAGCAGCUGcUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 46118 0.66 0.982665
Target:  5'- gCAGAACCCucCGUCuccaaCGACGACGgcaaCGg -3'
miRNA:   3'- -GUCUUGGGc-GCAGca---GCUGCUGCa---GC- -5'
29792 3' -55.6 NC_006273.1 + 100076 0.66 0.982665
Target:  5'- aCAGGcGCCCGaggCGUCGcacAUGACGUCu -3'
miRNA:   3'- -GUCU-UGGGCgcaGCAGC---UGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 117919 0.66 0.980725
Target:  5'- aGGAAaCCGCGgcggCGUCGuCGuCGUCc -3'
miRNA:   3'- gUCUUgGGCGCa---GCAGCuGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 83333 0.66 0.980725
Target:  5'- -uGGACCCgGCGUgGUgggaccCGGCGGCGcCGu -3'
miRNA:   3'- guCUUGGG-CGCAgCA------GCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 126862 0.66 0.980725
Target:  5'- gCGGcguAUgUGCGUCGgUGGCGACGUCc -3'
miRNA:   3'- -GUCu--UGgGCGCAGCaGCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 163691 0.66 0.980725
Target:  5'- aCAGAccGCCUGCcaCGUCGGCGGCc--- -3'
miRNA:   3'- -GUCU--UGGGCGcaGCAGCUGCUGcagc -5'
29792 3' -55.6 NC_006273.1 + 12854 0.66 0.980725
Target:  5'- cCAGGccgGCCgGCGUuuucacuacgcCGUgGACGACGcCGa -3'
miRNA:   3'- -GUCU---UGGgCGCA-----------GCAgCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 115492 0.66 0.978628
Target:  5'- uCAGAGCCaGCGgCG-CGGCGGCGa-- -3'
miRNA:   3'- -GUCUUGGgCGCaGCaGCUGCUGCagc -5'
29792 3' -55.6 NC_006273.1 + 156520 0.66 0.978628
Target:  5'- aAGAcgGCCUGCGaguUCGUCaAgGGCGUCa -3'
miRNA:   3'- gUCU--UGGGCGC---AGCAGcUgCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 104539 0.66 0.978628
Target:  5'- aCAGcuuguGACCCGCGcUCGUCGuCGggaGCG-CGg -3'
miRNA:   3'- -GUC-----UUGGGCGC-AGCAGCuGC---UGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 196756 0.66 0.978628
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 1864 0.66 0.978628
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 160888 0.66 0.978628
Target:  5'- -cGAGCCgGCGcCGgguaaauaaaUCGGCGgugGCGUCGg -3'
miRNA:   3'- guCUUGGgCGCaGC----------AGCUGC---UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 101486 0.66 0.978628
Target:  5'- ----uUCCGUGUCGaCGGCGAgGUUGg -3'
miRNA:   3'- gucuuGGGCGCAGCaGCUGCUgCAGC- -5'
29792 3' -55.6 NC_006273.1 + 199443 0.66 0.978628
Target:  5'- -cGAACuCCaCGUCGUCGGCGuguACGUa- -3'
miRNA:   3'- guCUUG-GGcGCAGCAGCUGC---UGCAgc -5'
29792 3' -55.6 NC_006273.1 + 102860 0.66 0.978409
Target:  5'- uCGGAagcaaaaACCa-CGUCGUCuuCGGCGUCGg -3'
miRNA:   3'- -GUCU-------UGGgcGCAGCAGcuGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 194351 0.66 0.976366
Target:  5'- uCAGAcGCCCGagcaGUCGACGcCGUCc -3'
miRNA:   3'- -GUCU-UGGGCgcagCAGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 147409 0.66 0.976366
Target:  5'- -cGcGCCCagugGCGUCGgcgCGGCGuccgGCGUCGg -3'
miRNA:   3'- guCuUGGG----CGCAGCa--GCUGC----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 72383 0.66 0.975655
Target:  5'- gGGAGCgaaagaagugacgaCgGCGaCGUCGACGACGgCGa -3'
miRNA:   3'- gUCUUG--------------GgCGCaGCAGCUGCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.