miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 68806 0.66 0.971326
Target:  5'- uGGAACCCggacGCGUaGcCGGCGGCGcCGc -3'
miRNA:   3'- gUCUUGGG----CGCAgCaGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 194351 0.66 0.976366
Target:  5'- uCAGAcGCCCGagcaGUCGACGcCGUCc -3'
miRNA:   3'- -GUCU-UGGGCgcagCAGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 196756 0.66 0.978628
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 188008 0.66 0.973934
Target:  5'- cCGGcaaCCGCGUCGUCGuuGcuauCGUCGc -3'
miRNA:   3'- -GUCuugGGCGCAGCAGCugCu---GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 101486 0.66 0.978628
Target:  5'- ----uUCCGUGUCGaCGGCGAgGUUGg -3'
miRNA:   3'- gucuuGGGCGCAGCaGCUGCUgCAGC- -5'
29792 3' -55.6 NC_006273.1 + 222611 0.66 0.973934
Target:  5'- cCAGAuCUCGCGUCGa-GAC-ACGUCa -3'
miRNA:   3'- -GUCUuGGGCGCAGCagCUGcUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 199443 0.66 0.978628
Target:  5'- -cGAACuCCaCGUCGUCGGCGuguACGUa- -3'
miRNA:   3'- guCUUG-GGcGCAGCAGCUGC---UGCAgc -5'
29792 3' -55.6 NC_006273.1 + 187216 0.66 0.971326
Target:  5'- gCGGG--CUGCGUCGccuUCGGUGACGUCGg -3'
miRNA:   3'- -GUCUugGGCGCAGC---AGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 129669 0.66 0.971326
Target:  5'- aGGAcGCCCGCuucuGUCGUCcGCGAcccguuaaCGUCGa -3'
miRNA:   3'- gUCU-UGGGCG----CAGCAGcUGCU--------GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 34254 0.66 0.982665
Target:  5'- --uAAUCCGCaccuGUCGUCGAC-AUGUCGc -3'
miRNA:   3'- gucUUGGGCG----CAGCAGCUGcUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 46118 0.66 0.982665
Target:  5'- gCAGAACCCucCGUCuccaaCGACGACGgcaaCGg -3'
miRNA:   3'- -GUCUUGGGc-GCAGca---GCUGCUGCa---GC- -5'
29792 3' -55.6 NC_006273.1 + 189316 0.66 0.973934
Target:  5'- gCGGcACCUGCGgCGUCGGCGG-GUgGg -3'
miRNA:   3'- -GUCuUGGGCGCaGCAGCUGCUgCAgC- -5'
29792 3' -55.6 NC_006273.1 + 219943 0.66 0.973682
Target:  5'- gCAGAauacgccgcucgcGCUCGCGUCGcucaUCGggcaacGCGGCGUCu -3'
miRNA:   3'- -GUCU-------------UGGGCGCAGC----AGC------UGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 185442 0.66 0.971326
Target:  5'- aGGAACUcuCGCGUCGcCGGCGguACG-CGa -3'
miRNA:   3'- gUCUUGG--GCGCAGCaGCUGC--UGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 88003 0.66 0.971326
Target:  5'- aAGAGCgCCGacagGUCGUgcaccuccccccCGGCGGCGUCc -3'
miRNA:   3'- gUCUUG-GGCg---CAGCA------------GCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 72383 0.66 0.975655
Target:  5'- gGGAGCgaaagaagugacgaCgGCGaCGUCGACGACGgCGa -3'
miRNA:   3'- gUCUUG--------------GgCGCaGCAGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 94273 0.66 0.973934
Target:  5'- gAG-ACCCGCGUCGUUcaGCGagagaGCGUCc -3'
miRNA:   3'- gUCuUGGGCGCAGCAGc-UGC-----UGCAGc -5'
29792 3' -55.6 NC_006273.1 + 28933 0.66 0.974928
Target:  5'- cCAGAccagGCCaCGCGUUgcccggguuuccacgGUCG-CGACGUCu -3'
miRNA:   3'- -GUCU----UGG-GCGCAG---------------CAGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 126862 0.66 0.980725
Target:  5'- gCGGcguAUgUGCGUCGgUGGCGACGUCc -3'
miRNA:   3'- -GUCu--UGgGCGCAGCaGCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 117919 0.66 0.980725
Target:  5'- aGGAAaCCGCGgcggCGUCGuCGuCGUCc -3'
miRNA:   3'- gUCUUgGGCGCa---GCAGCuGCuGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.