miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 189316 0.66 0.973934
Target:  5'- gCGGcACCUGCGgCGUCGGCGG-GUgGg -3'
miRNA:   3'- -GUCuUGGGCGCaGCAGCUGCUgCAgC- -5'
29792 3' -55.6 NC_006273.1 + 219943 0.66 0.973682
Target:  5'- gCAGAauacgccgcucgcGCUCGCGUCGcucaUCGggcaacGCGGCGUCu -3'
miRNA:   3'- -GUCU-------------UGGGCGCAGC----AGC------UGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 43314 0.66 0.972391
Target:  5'- cCAGAACCCggaaGCGUCGUCGccccggacugcgcccGCGGucugcuauuCGUCc -3'
miRNA:   3'- -GUCUUGGG----CGCAGCAGC---------------UGCU---------GCAGc -5'
29792 3' -55.6 NC_006273.1 + 185442 0.66 0.971326
Target:  5'- aGGAACUcuCGCGUCGcCGGCGguACG-CGa -3'
miRNA:   3'- gUCUUGG--GCGCAGCaGCUGC--UGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 129669 0.66 0.971326
Target:  5'- aGGAcGCCCGCuucuGUCGUCcGCGAcccguuaaCGUCGa -3'
miRNA:   3'- gUCU-UGGGCG----CAGCAGcUGCU--------GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 88003 0.66 0.971326
Target:  5'- aAGAGCgCCGacagGUCGUgcaccuccccccCGGCGGCGUCc -3'
miRNA:   3'- gUCUUG-GGCg---CAGCA------------GCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 199443 0.66 0.978628
Target:  5'- -cGAACuCCaCGUCGUCGGCGuguACGUa- -3'
miRNA:   3'- guCUUG-GGcGCAGCAGCUGC---UGCAgc -5'
29792 3' -55.6 NC_006273.1 + 196756 0.66 0.978628
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 117919 0.66 0.980725
Target:  5'- aGGAAaCCGCGgcggCGUCGuCGuCGUCc -3'
miRNA:   3'- gUCUUgGGCGCa---GCAGCuGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 126862 0.66 0.980725
Target:  5'- gCGGcguAUgUGCGUCGgUGGCGACGUCc -3'
miRNA:   3'- -GUCu--UGgGCGCAGCaGCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 194351 0.66 0.976366
Target:  5'- uCAGAcGCCCGagcaGUCGACGcCGUCc -3'
miRNA:   3'- -GUCU-UGGGCgcagCAGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 28933 0.66 0.974928
Target:  5'- cCAGAccagGCCaCGCGUUgcccggguuuccacgGUCG-CGACGUCu -3'
miRNA:   3'- -GUCU----UGG-GCGCAG---------------CAGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 184617 0.67 0.955441
Target:  5'- gCGGuacauCCCGCGUCGUgauuccguaGACGccaggGCGUCGg -3'
miRNA:   3'- -GUCuu---GGGCGCAGCAg--------CUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 229643 0.67 0.955441
Target:  5'- aAGAAUCCGaCGacgaGUCGuCGGCGUCu -3'
miRNA:   3'- gUCUUGGGC-GCag--CAGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 222509 0.67 0.955441
Target:  5'- cCAGAcguUCgGCGUCGUCcACGGCGUa- -3'
miRNA:   3'- -GUCUu--GGgCGCAGCAGcUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 33237 0.67 0.951664
Target:  5'- gAGGGCCC-CGgggCGgCGACGACGgCGg -3'
miRNA:   3'- gUCUUGGGcGCa--GCaGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 32645 0.67 0.951664
Target:  5'- aCGGAugACCUG-GcCGUCGGCGucGCGUCGc -3'
miRNA:   3'- -GUCU--UGGGCgCaGCAGCUGC--UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 213132 0.67 0.965555
Target:  5'- gCGGAG-CCGCGUCGcUCGcCGGCGcCc -3'
miRNA:   3'- -GUCUUgGGCGCAGC-AGCuGCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 114436 0.67 0.962383
Target:  5'- aAGAcgcCCCGCGUCaccggCGGCGGCGcCa -3'
miRNA:   3'- gUCUu--GGGCGCAGca---GCUGCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 24772 0.67 0.959013
Target:  5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3'
miRNA:   3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.