Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29792 | 3' | -55.6 | NC_006273.1 | + | 198175 | 0.67 | 0.955441 |
Target: 5'- -uGGGCaCGCG-CGUCGGCcGCGUCGc -3' miRNA: 3'- guCUUGgGCGCaGCAGCUGcUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 99298 | 0.67 | 0.951664 |
Target: 5'- ---cGCCCacgGCGUCcUCGGCGuCGUCGg -3' miRNA: 3'- gucuUGGG---CGCAGcAGCUGCuGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 171822 | 0.67 | 0.959013 |
Target: 5'- aGGuGCUCGagaGUCGU-GGCGAUGUCGa -3' miRNA: 3'- gUCuUGGGCg--CAGCAgCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 24772 | 0.67 | 0.959013 |
Target: 5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3' miRNA: 3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 33237 | 0.67 | 0.951664 |
Target: 5'- gAGGGCCC-CGgggCGgCGACGACGgCGg -3' miRNA: 3'- gUCUUGGGcGCa--GCaGCUGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 229643 | 0.67 | 0.955441 |
Target: 5'- aAGAAUCCGaCGacgaGUCGuCGGCGUCu -3' miRNA: 3'- gUCUUGGGC-GCag--CAGCuGCUGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 118906 | 0.67 | 0.965555 |
Target: 5'- gAGAGCCC-CGUUGUuacCGcuuCGACGUCu -3' miRNA: 3'- gUCUUGGGcGCAGCA---GCu--GCUGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 201256 | 0.67 | 0.959013 |
Target: 5'- -cGGGCCgGC-UUGUCGGCGAuUGUCGc -3' miRNA: 3'- guCUUGGgCGcAGCAGCUGCU-GCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 158703 | 0.67 | 0.959013 |
Target: 5'- gCAGGGCacaCGCGg-GUCGGCGGCGa-- -3' miRNA: 3'- -GUCUUGg--GCGCagCAGCUGCUGCagc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 204922 | 0.67 | 0.965555 |
Target: 5'- --cGAUCCGCGUCagcccCGACGugGUUGu -3' miRNA: 3'- gucUUGGGCGCAGca---GCUGCugCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 211773 | 0.67 | 0.959013 |
Target: 5'- gCAG-GCCCGgGcUCGgCGGCGACGUg- -3' miRNA: 3'- -GUCuUGGGCgC-AGCaGCUGCUGCAgc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 188355 | 0.67 | 0.968534 |
Target: 5'- aCAGAuaacgugaaACaCCGCGgucauccaaGUCgGGCGGCGUCGg -3' miRNA: 3'- -GUCU---------UG-GGCGCag-------CAG-CUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 32645 | 0.67 | 0.951664 |
Target: 5'- aCGGAugACCUG-GcCGUCGGCGucGCGUCGc -3' miRNA: 3'- -GUCU--UGGGCgCaGCAGCUGC--UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 222509 | 0.67 | 0.955441 |
Target: 5'- cCAGAcguUCgGCGUCGUCcACGGCGUa- -3' miRNA: 3'- -GUCUu--GGgCGCAGCAGcUGCUGCAgc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 213132 | 0.67 | 0.965555 |
Target: 5'- gCGGAG-CCGCGUCGcUCGcCGGCGcCc -3' miRNA: 3'- -GUCUUgGGCGCAGC-AGCuGCUGCaGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 48604 | 0.67 | 0.962383 |
Target: 5'- gGGAAUaauGUGcCGUCGAcCGACGUCGc -3' miRNA: 3'- gUCUUGgg-CGCaGCAGCU-GCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 219706 | 0.68 | 0.943481 |
Target: 5'- ----cCUCGCG-CGUCGACGaacGCGUCGu -3' miRNA: 3'- gucuuGGGCGCaGCAGCUGC---UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 142025 | 0.68 | 0.943481 |
Target: 5'- gAGAACCaGCGUCGgccCGugGugccguccACGUCGu -3' miRNA: 3'- gUCUUGGgCGCAGCa--GCugC--------UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 187944 | 0.68 | 0.947679 |
Target: 5'- uGGcAGCagCGCGU--UCGACGACGUCGu -3' miRNA: 3'- gUC-UUGg-GCGCAgcAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 147206 | 0.68 | 0.943481 |
Target: 5'- gAGAucCCCGCGUC--CGACGAUGUg- -3' miRNA: 3'- gUCUu-GGGCGCAGcaGCUGCUGCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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