Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29792 | 3' | -55.6 | NC_006273.1 | + | 148043 | 1.08 | 0.007762 |
Target: 5'- gCAGAACCCGCGUCGUCGACGACGUCGu -3' miRNA: 3'- -GUCUUGGGCGCAGCAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 79942 | 0.82 | 0.29817 |
Target: 5'- aCAGAACCCGCGUCGcCGggcACGGCGgCGg -3' miRNA: 3'- -GUCUUGGGCGCAGCaGC---UGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 156417 | 0.76 | 0.601186 |
Target: 5'- gCGGAcggcguacauCCCGCGUgggucaGUCGACGGCGUCGc -3' miRNA: 3'- -GUCUu---------GGGCGCAg-----CAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 196862 | 0.76 | 0.572158 |
Target: 5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3' miRNA: 3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 1970 | 0.76 | 0.572158 |
Target: 5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3' miRNA: 3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 156421 | 0.76 | 0.601186 |
Target: 5'- aCGGcguacauCCCGCGUgggucaGUCGACGGCGUCGc -3' miRNA: 3'- -GUCuu-----GGGCGCAg-----CAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 94710 | 0.75 | 0.640148 |
Target: 5'- ---cACCCGcCGUCGUCGccuGCGGCGUUGg -3' miRNA: 3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 42676 | 0.74 | 0.69827 |
Target: 5'- gAGAcgGCCCGUGUacacgagcuUGUUGACGGCGUUGa -3' miRNA: 3'- gUCU--UGGGCGCA---------GCAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 170058 | 0.73 | 0.726753 |
Target: 5'- gGGcAACCCGgGUCGaCGAUGGgGUCGg -3' miRNA: 3'- gUC-UUGGGCgCAGCaGCUGCUgCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 227636 | 0.73 | 0.754569 |
Target: 5'- cCGGAGCCCGC-UCGaUCGACGGCuaCGg -3' miRNA: 3'- -GUCUUGGGCGcAGC-AGCUGCUGcaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 40466 | 0.73 | 0.726753 |
Target: 5'- uGGuuaCCGCGggauaCGUCGGCGugGUCGa -3' miRNA: 3'- gUCuugGGCGCa----GCAGCUGCugCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 44569 | 0.73 | 0.745385 |
Target: 5'- uGGAuuCCCGUGUgUGUCGugGugGUCa -3' miRNA: 3'- gUCUu-GGGCGCA-GCAGCugCugCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 81279 | 0.72 | 0.79025 |
Target: 5'- aCAuGACCCa-GUUGUCGGCGAUGUCGc -3' miRNA: 3'- -GUcUUGGGcgCAGCAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 158232 | 0.72 | 0.807345 |
Target: 5'- -cGGGCgCGCGUCGgcCGGCGACGgCGg -3' miRNA: 3'- guCUUGgGCGCAGCa-GCUGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 221544 | 0.72 | 0.807345 |
Target: 5'- aAGGACCCcgaauGCGUcCGUCGGuccCGACGUCc -3' miRNA: 3'- gUCUUGGG-----CGCA-GCAGCU---GCUGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 187114 | 0.71 | 0.831891 |
Target: 5'- cCAGAucguCCCGCGg-GUCuuCGACGUCGc -3' miRNA: 3'- -GUCUu---GGGCGCagCAGcuGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 232743 | 0.71 | 0.854953 |
Target: 5'- cCAGAGCUugaGCGUCGgCG-CGGCGUCu -3' miRNA: 3'- -GUCUUGGg--CGCAGCaGCuGCUGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 74846 | 0.71 | 0.831095 |
Target: 5'- -cGGGCCCGCGUCcUCGuCGaucaccagcggucGCGUCGg -3' miRNA: 3'- guCUUGGGCGCAGcAGCuGC-------------UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 50658 | 0.71 | 0.823865 |
Target: 5'- aAGAcgUCGCGUUGUCGGUGACGUUGg -3' miRNA: 3'- gUCUugGGCGCAGCAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 33839 | 0.7 | 0.89223 |
Target: 5'- aCAGGcccaGCCCGCGgggagcagaaaguagUCGUCGACcaGCGUCu -3' miRNA: 3'- -GUCU----UGGGCGC---------------AGCAGCUGc-UGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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