Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29792 | 3' | -55.6 | NC_006273.1 | + | 161849 | 0.7 | 0.889669 |
Target: 5'- aGGAGCaCGUgaGUCGUCGGCGAggggUGUCGa -3' miRNA: 3'- gUCUUGgGCG--CAGCAGCUGCU----GCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 162971 | 0.7 | 0.876371 |
Target: 5'- gCGGAGCggugguuucgUCGcCGUCGUCGACGucgcCGUCGu -3' miRNA: 3'- -GUCUUG----------GGC-GCAGCAGCUGCu---GCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 93092 | 0.7 | 0.883121 |
Target: 5'- -cGAGCaCCGCGUCcaCGccgcccacACGACGUCGg -3' miRNA: 3'- guCUUG-GGCGCAGcaGC--------UGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 33839 | 0.7 | 0.89223 |
Target: 5'- aCAGGcccaGCCCGCGgggagcagaaaguagUCGUCGACcaGCGUCu -3' miRNA: 3'- -GUCU----UGGGCGC---------------AGCAGCUGc-UGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 201115 | 0.7 | 0.89223 |
Target: 5'- gGGGACCCGgGUgucgcgacaUGUCGACGACaggugcggauuagugGUCGu -3' miRNA: 3'- gUCUUGGGCgCA---------GCAGCUGCUG---------------CAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 195695 | 0.7 | 0.889669 |
Target: 5'- aCGGAGCcguCCGCGUgUGUaaaCGGCGugGUCGc -3' miRNA: 3'- -GUCUUG---GGCGCA-GCA---GCUGCugCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 803 | 0.7 | 0.889669 |
Target: 5'- aCGGAGCcguCCGCGUgUGUaaaCGGCGugGUCGc -3' miRNA: 3'- -GUCUUG---GGCGCA-GCA---GCUGCugCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 117355 | 0.69 | 0.915996 |
Target: 5'- uGGAACCCGCGUgcccgccacuuccacCGUCGcuauUGACGUg- -3' miRNA: 3'- gUCUUGGGCGCA---------------GCAGCu---GCUGCAgc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 20930 | 0.69 | 0.896011 |
Target: 5'- aCGGGGCUgGCGUuucuagguggcCGU-GACGACGUCGc -3' miRNA: 3'- -GUCUUGGgCGCA-----------GCAgCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 114359 | 0.69 | 0.896011 |
Target: 5'- aGGGugCCGCccagggCGaCGACGACGUCu -3' miRNA: 3'- gUCUugGGCGca----GCaGCUGCUGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 189450 | 0.69 | 0.896011 |
Target: 5'- gGGAGCCgGCcUCG-CGACGAagucuCGUCGg -3' miRNA: 3'- gUCUUGGgCGcAGCaGCUGCU-----GCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 124123 | 0.69 | 0.908065 |
Target: 5'- aCAGAGCUCgGCGUUGgCGGCGGCauuugccgcuguGUCGg -3' miRNA: 3'- -GUCUUGGG-CGCAGCaGCUGCUG------------CAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 187422 | 0.69 | 0.908646 |
Target: 5'- -uGAACCCGCG-CGgcggucuguuauccgCGACGACG-CGu -3' miRNA: 3'- guCUUGGGCGCaGCa--------------GCUGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 177526 | 0.69 | 0.919266 |
Target: 5'- -cGAACCgGCGgCGUUGAaCGugGUCc -3' miRNA: 3'- guCUUGGgCGCaGCAGCU-GCugCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 47423 | 0.69 | 0.913773 |
Target: 5'- aCAucAUCCGCGacUCGUaCGACGuCGUCGa -3' miRNA: 3'- -GUcuUGGGCGC--AGCA-GCUGCuGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 26169 | 0.69 | 0.919266 |
Target: 5'- gGGAAaCCGCGUCGUCGGaaACGgagCGu -3' miRNA: 3'- gUCUUgGGCGCAGCAGCUgcUGCa--GC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 31657 | 0.69 | 0.924543 |
Target: 5'- uCAGGccAgCUGCGUCGUCaagGACGGCGUg- -3' miRNA: 3'- -GUCU--UgGGCGCAGCAG---CUGCUGCAgc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 193913 | 0.69 | 0.902144 |
Target: 5'- aAGAaaGCgCCGUGUUGUgagcaGACGACGUUGg -3' miRNA: 3'- gUCU--UG-GGCGCAGCAg----CUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 219706 | 0.68 | 0.943481 |
Target: 5'- ----cCUCGCG-CGUCGACGaacGCGUCGu -3' miRNA: 3'- gucuuGGGCGCaGCAGCUGC---UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 187944 | 0.68 | 0.947679 |
Target: 5'- uGGcAGCagCGCGU--UCGACGACGUCGu -3' miRNA: 3'- gUC-UUGg-GCGCAgcAGCUGCUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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