miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 148043 1.08 0.007762
Target:  5'- gCAGAACCCGCGUCGUCGACGACGUCGu -3'
miRNA:   3'- -GUCUUGGGCGCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 79942 0.82 0.29817
Target:  5'- aCAGAACCCGCGUCGcCGggcACGGCGgCGg -3'
miRNA:   3'- -GUCUUGGGCGCAGCaGC---UGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 196862 0.76 0.572158
Target:  5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 1970 0.76 0.572158
Target:  5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 156421 0.76 0.601186
Target:  5'- aCGGcguacauCCCGCGUgggucaGUCGACGGCGUCGc -3'
miRNA:   3'- -GUCuu-----GGGCGCAg-----CAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 156417 0.76 0.601186
Target:  5'- gCGGAcggcguacauCCCGCGUgggucaGUCGACGGCGUCGc -3'
miRNA:   3'- -GUCUu---------GGGCGCAg-----CAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 94710 0.75 0.640148
Target:  5'- ---cACCCGcCGUCGUCGccuGCGGCGUUGg -3'
miRNA:   3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 42676 0.74 0.69827
Target:  5'- gAGAcgGCCCGUGUacacgagcuUGUUGACGGCGUUGa -3'
miRNA:   3'- gUCU--UGGGCGCA---------GCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 170058 0.73 0.726753
Target:  5'- gGGcAACCCGgGUCGaCGAUGGgGUCGg -3'
miRNA:   3'- gUC-UUGGGCgCAGCaGCUGCUgCAGC- -5'
29792 3' -55.6 NC_006273.1 + 40466 0.73 0.726753
Target:  5'- uGGuuaCCGCGggauaCGUCGGCGugGUCGa -3'
miRNA:   3'- gUCuugGGCGCa----GCAGCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 44569 0.73 0.745385
Target:  5'- uGGAuuCCCGUGUgUGUCGugGugGUCa -3'
miRNA:   3'- gUCUu-GGGCGCA-GCAGCugCugCAGc -5'
29792 3' -55.6 NC_006273.1 + 227636 0.73 0.754569
Target:  5'- cCGGAGCCCGC-UCGaUCGACGGCuaCGg -3'
miRNA:   3'- -GUCUUGGGCGcAGC-AGCUGCUGcaGC- -5'
29792 3' -55.6 NC_006273.1 + 81279 0.72 0.79025
Target:  5'- aCAuGACCCa-GUUGUCGGCGAUGUCGc -3'
miRNA:   3'- -GUcUUGGGcgCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 158232 0.72 0.807345
Target:  5'- -cGGGCgCGCGUCGgcCGGCGACGgCGg -3'
miRNA:   3'- guCUUGgGCGCAGCa-GCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 221544 0.72 0.807345
Target:  5'- aAGGACCCcgaauGCGUcCGUCGGuccCGACGUCc -3'
miRNA:   3'- gUCUUGGG-----CGCA-GCAGCU---GCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 50658 0.71 0.823865
Target:  5'- aAGAcgUCGCGUUGUCGGUGACGUUGg -3'
miRNA:   3'- gUCUugGGCGCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 74846 0.71 0.831095
Target:  5'- -cGGGCCCGCGUCcUCGuCGaucaccagcggucGCGUCGg -3'
miRNA:   3'- guCUUGGGCGCAGcAGCuGC-------------UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 187114 0.71 0.831891
Target:  5'- cCAGAucguCCCGCGg-GUCuuCGACGUCGc -3'
miRNA:   3'- -GUCUu---GGGCGCagCAGcuGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 232743 0.71 0.854953
Target:  5'- cCAGAGCUugaGCGUCGgCG-CGGCGUCu -3'
miRNA:   3'- -GUCUUGGg--CGCAGCaGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 162971 0.7 0.876371
Target:  5'- gCGGAGCggugguuucgUCGcCGUCGUCGACGucgcCGUCGu -3'
miRNA:   3'- -GUCUUG----------GGC-GCAGCAGCUGCu---GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.