miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 28933 0.66 0.974928
Target:  5'- cCAGAccagGCCaCGCGUUgcccggguuuccacgGUCG-CGACGUCu -3'
miRNA:   3'- -GUCU----UGG-GCGCAG---------------CAGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 189316 0.66 0.973934
Target:  5'- gCGGcACCUGCGgCGUCGGCGG-GUgGg -3'
miRNA:   3'- -GUCuUGGGCGCaGCAGCUGCUgCAgC- -5'
29792 3' -55.6 NC_006273.1 + 222611 0.66 0.973934
Target:  5'- cCAGAuCUCGCGUCGa-GAC-ACGUCa -3'
miRNA:   3'- -GUCUuGGGCGCAGCagCUGcUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 188008 0.66 0.973934
Target:  5'- cCGGcaaCCGCGUCGUCGuuGcuauCGUCGc -3'
miRNA:   3'- -GUCuugGGCGCAGCAGCugCu---GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 94273 0.66 0.973934
Target:  5'- gAG-ACCCGCGUCGUUcaGCGagagaGCGUCc -3'
miRNA:   3'- gUCuUGGGCGCAGCAGc-UGC-----UGCAGc -5'
29792 3' -55.6 NC_006273.1 + 219943 0.66 0.973682
Target:  5'- gCAGAauacgccgcucgcGCUCGCGUCGcucaUCGggcaacGCGGCGUCu -3'
miRNA:   3'- -GUCU-------------UGGGCGCAGC----AGC------UGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 43314 0.66 0.972391
Target:  5'- cCAGAACCCggaaGCGUCGUCGccccggacugcgcccGCGGucugcuauuCGUCc -3'
miRNA:   3'- -GUCUUGGG----CGCAGCAGC---------------UGCU---------GCAGc -5'
29792 3' -55.6 NC_006273.1 + 88003 0.66 0.971326
Target:  5'- aAGAGCgCCGacagGUCGUgcaccuccccccCGGCGGCGUCc -3'
miRNA:   3'- gUCUUG-GGCg---CAGCA------------GCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 68806 0.66 0.971326
Target:  5'- uGGAACCCggacGCGUaGcCGGCGGCGcCGc -3'
miRNA:   3'- gUCUUGGG----CGCAgCaGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 129669 0.66 0.971326
Target:  5'- aGGAcGCCCGCuucuGUCGUCcGCGAcccguuaaCGUCGa -3'
miRNA:   3'- gUCU-UGGGCG----CAGCAGcUGCU--------GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 185442 0.66 0.971326
Target:  5'- aGGAACUcuCGCGUCGcCGGCGguACG-CGa -3'
miRNA:   3'- gUCUUGG--GCGCAGCaGCUGC--UGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 187216 0.66 0.971326
Target:  5'- gCGGG--CUGCGUCGccuUCGGUGACGUCGg -3'
miRNA:   3'- -GUCUugGGCGCAGC---AGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 188355 0.67 0.968534
Target:  5'- aCAGAuaacgugaaACaCCGCGgucauccaaGUCgGGCGGCGUCGg -3'
miRNA:   3'- -GUCU---------UG-GGCGCag-------CAG-CUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 213132 0.67 0.965555
Target:  5'- gCGGAG-CCGCGUCGcUCGcCGGCGcCc -3'
miRNA:   3'- -GUCUUgGGCGCAGC-AGCuGCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 204922 0.67 0.965555
Target:  5'- --cGAUCCGCGUCagcccCGACGugGUUGu -3'
miRNA:   3'- gucUUGGGCGCAGca---GCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 79065 0.67 0.965555
Target:  5'- cCAGAGCCUGCGgCGUCaGGCcACGaaagCGg -3'
miRNA:   3'- -GUCUUGGGCGCaGCAG-CUGcUGCa---GC- -5'
29792 3' -55.6 NC_006273.1 + 118906 0.67 0.965555
Target:  5'- gAGAGCCC-CGUUGUuacCGcuuCGACGUCu -3'
miRNA:   3'- gUCUUGGGcGCAGCA---GCu--GCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 48604 0.67 0.962383
Target:  5'- gGGAAUaauGUGcCGUCGAcCGACGUCGc -3'
miRNA:   3'- gUCUUGgg-CGCaGCAGCU-GCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 114436 0.67 0.962383
Target:  5'- aAGAcgcCCCGCGUCaccggCGGCGGCGcCa -3'
miRNA:   3'- gUCUu--GGGCGCAGca---GCUGCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 87341 0.67 0.962383
Target:  5'- ------aCGaCGUCGUCGACGACG-CGg -3'
miRNA:   3'- gucuuggGC-GCAGCAGCUGCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.