miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 201256 0.67 0.959013
Target:  5'- -cGGGCCgGC-UUGUCGGCGAuUGUCGc -3'
miRNA:   3'- guCUUGGgCGcAGCAGCUGCU-GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 171822 0.67 0.959013
Target:  5'- aGGuGCUCGagaGUCGU-GGCGAUGUCGa -3'
miRNA:   3'- gUCuUGGGCg--CAGCAgCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 24772 0.67 0.959013
Target:  5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3'
miRNA:   3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 211773 0.67 0.959013
Target:  5'- gCAG-GCCCGgGcUCGgCGGCGACGUg- -3'
miRNA:   3'- -GUCuUGGGCgC-AGCaGCUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 158703 0.67 0.959013
Target:  5'- gCAGGGCacaCGCGg-GUCGGCGGCGa-- -3'
miRNA:   3'- -GUCUUGg--GCGCagCAGCUGCUGCagc -5'
29792 3' -55.6 NC_006273.1 + 40903 0.67 0.956894
Target:  5'- -uGAACCgGCGUCGacgcaccgucugcgcUCGggcggacgcguGCGGCGUCGc -3'
miRNA:   3'- guCUUGGgCGCAGC---------------AGC-----------UGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 129516 0.67 0.955441
Target:  5'- aCGGAcACCCuCGcCGguagaCGAUGACGUCGa -3'
miRNA:   3'- -GUCU-UGGGcGCaGCa----GCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 35932 0.67 0.955441
Target:  5'- gAGAACCUGUacGUacaCGcCGACGACGUgGa -3'
miRNA:   3'- gUCUUGGGCG--CA---GCaGCUGCUGCAgC- -5'
29792 3' -55.6 NC_006273.1 + 184617 0.67 0.955441
Target:  5'- gCGGuacauCCCGCGUCGUgauuccguaGACGccaggGCGUCGg -3'
miRNA:   3'- -GUCuu---GGGCGCAGCAg--------CUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 198175 0.67 0.955441
Target:  5'- -uGGGCaCGCG-CGUCGGCcGCGUCGc -3'
miRNA:   3'- guCUUGgGCGCaGCAGCUGcUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 222509 0.67 0.955441
Target:  5'- cCAGAcguUCgGCGUCGUCcACGGCGUa- -3'
miRNA:   3'- -GUCUu--GGgCGCAGCAGcUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 229643 0.67 0.955441
Target:  5'- aAGAAUCCGaCGacgaGUCGuCGGCGUCu -3'
miRNA:   3'- gUCUUGGGC-GCag--CAGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 99298 0.67 0.951664
Target:  5'- ---cGCCCacgGCGUCcUCGGCGuCGUCGg -3'
miRNA:   3'- gucuUGGG---CGCAGcAGCUGCuGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 33237 0.67 0.951664
Target:  5'- gAGGGCCC-CGgggCGgCGACGACGgCGg -3'
miRNA:   3'- gUCUUGGGcGCa--GCaGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 95219 0.67 0.951664
Target:  5'- uCGGAGC--GCGUCGUcuaCGACGGCGUUu -3'
miRNA:   3'- -GUCUUGggCGCAGCA---GCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 32645 0.67 0.951664
Target:  5'- aCGGAugACCUG-GcCGUCGGCGucGCGUCGc -3'
miRNA:   3'- -GUCU--UGGGCgCaGCAGCUGC--UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 47330 0.68 0.947679
Target:  5'- gAGAcgagACCCGCGcCGcCGGCGcUGUCa -3'
miRNA:   3'- gUCU----UGGGCGCaGCaGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 187944 0.68 0.947679
Target:  5'- uGGcAGCagCGCGU--UCGACGACGUCGu -3'
miRNA:   3'- gUC-UUGg-GCGCAgcAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 7681 0.68 0.943481
Target:  5'- uCAGAgaccGCgCCGuCGUUGUUGACGAUGcCGc -3'
miRNA:   3'- -GUCU----UG-GGC-GCAGCAGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 219706 0.68 0.943481
Target:  5'- ----cCUCGCG-CGUCGACGaacGCGUCGu -3'
miRNA:   3'- gucuuGGGCGCaGCAGCUGC---UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.