miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 803 0.7 0.889669
Target:  5'- aCGGAGCcguCCGCGUgUGUaaaCGGCGugGUCGc -3'
miRNA:   3'- -GUCUUG---GGCGCA-GCA---GCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 1864 0.66 0.978628
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 1970 0.76 0.572158
Target:  5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 7681 0.68 0.943481
Target:  5'- uCAGAgaccGCgCCGuCGUUGUUGACGAUGcCGc -3'
miRNA:   3'- -GUCU----UG-GGC-GCAGCAGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 12854 0.66 0.980725
Target:  5'- cCAGGccgGCCgGCGUuuucacuacgcCGUgGACGACGcCGa -3'
miRNA:   3'- -GUCU---UGGgCGCA-----------GCAgCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 20930 0.69 0.896011
Target:  5'- aCGGGGCUgGCGUuucuagguggcCGU-GACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCA-----------GCAgCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 24772 0.67 0.959013
Target:  5'- aGGAGCCcCGCGaggUGUUGACGuCGUUu -3'
miRNA:   3'- gUCUUGG-GCGCa--GCAGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 26169 0.69 0.919266
Target:  5'- gGGAAaCCGCGUCGUCGGaaACGgagCGu -3'
miRNA:   3'- gUCUUgGGCGCAGCAGCUgcUGCa--GC- -5'
29792 3' -55.6 NC_006273.1 + 26905 0.68 0.93907
Target:  5'- gCGGAGgUCG-GUCGaUGACGAUGUCGa -3'
miRNA:   3'- -GUCUUgGGCgCAGCaGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 28933 0.66 0.974928
Target:  5'- cCAGAccagGCCaCGCGUUgcccggguuuccacgGUCG-CGACGUCu -3'
miRNA:   3'- -GUCU----UGG-GCGCAG---------------CAGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 30970 0.68 0.929106
Target:  5'- -cGAGCCCaGCGUgGUCG-CGccgcagcACGUCGa -3'
miRNA:   3'- guCUUGGG-CGCAgCAGCuGC-------UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 31657 0.69 0.924543
Target:  5'- uCAGGccAgCUGCGUCGUCaagGACGGCGUg- -3'
miRNA:   3'- -GUCU--UgGGCGCAGCAG---CUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 32645 0.67 0.951664
Target:  5'- aCGGAugACCUG-GcCGUCGGCGucGCGUCGc -3'
miRNA:   3'- -GUCU--UGGGCgCaGCAGCUGC--UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 33237 0.67 0.951664
Target:  5'- gAGGGCCC-CGgggCGgCGACGACGgCGg -3'
miRNA:   3'- gUCUUGGGcGCa--GCaGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 33839 0.7 0.89223
Target:  5'- aCAGGcccaGCCCGCGgggagcagaaaguagUCGUCGACcaGCGUCu -3'
miRNA:   3'- -GUCU----UGGGCGC---------------AGCAGCUGc-UGCAGc -5'
29792 3' -55.6 NC_006273.1 + 34254 0.66 0.982665
Target:  5'- --uAAUCCGCaccuGUCGUCGAC-AUGUCGc -3'
miRNA:   3'- gucUUGGGCG----CAGCAGCUGcUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 35932 0.67 0.955441
Target:  5'- gAGAACCUGUacGUacaCGcCGACGACGUgGa -3'
miRNA:   3'- gUCUUGGGCG--CA---GCaGCUGCUGCAgC- -5'
29792 3' -55.6 NC_006273.1 + 40466 0.73 0.726753
Target:  5'- uGGuuaCCGCGggauaCGUCGGCGugGUCGa -3'
miRNA:   3'- gUCuugGGCGCa----GCAGCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 40903 0.67 0.956894
Target:  5'- -uGAACCgGCGUCGacgcaccgucugcgcUCGggcggacgcguGCGGCGUCGc -3'
miRNA:   3'- guCUUGGgCGCAGC---------------AGC-----------UGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 42676 0.74 0.69827
Target:  5'- gAGAcgGCCCGUGUacacgagcuUGUUGACGGCGUUGa -3'
miRNA:   3'- gUCU--UGGGCGCA---------GCAGCUGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.