miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 43314 0.66 0.972391
Target:  5'- cCAGAACCCggaaGCGUCGUCGccccggacugcgcccGCGGucugcuauuCGUCc -3'
miRNA:   3'- -GUCUUGGG----CGCAGCAGC---------------UGCU---------GCAGc -5'
29792 3' -55.6 NC_006273.1 + 44569 0.73 0.745385
Target:  5'- uGGAuuCCCGUGUgUGUCGugGugGUCa -3'
miRNA:   3'- gUCUu-GGGCGCA-GCAGCugCugCAGc -5'
29792 3' -55.6 NC_006273.1 + 46118 0.66 0.982665
Target:  5'- gCAGAACCCucCGUCuccaaCGACGACGgcaaCGg -3'
miRNA:   3'- -GUCUUGGGc-GCAGca---GCUGCUGCa---GC- -5'
29792 3' -55.6 NC_006273.1 + 47330 0.68 0.947679
Target:  5'- gAGAcgagACCCGCGcCGcCGGCGcUGUCa -3'
miRNA:   3'- gUCU----UGGGCGCaGCaGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 47423 0.69 0.913773
Target:  5'- aCAucAUCCGCGacUCGUaCGACGuCGUCGa -3'
miRNA:   3'- -GUcuUGGGCGC--AGCA-GCUGCuGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 48604 0.67 0.962383
Target:  5'- gGGAAUaauGUGcCGUCGAcCGACGUCGc -3'
miRNA:   3'- gUCUUGgg-CGCaGCAGCU-GCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 50658 0.71 0.823865
Target:  5'- aAGAcgUCGCGUUGUCGGUGACGUUGg -3'
miRNA:   3'- gUCUugGGCGCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 68806 0.66 0.971326
Target:  5'- uGGAACCCggacGCGUaGcCGGCGGCGcCGc -3'
miRNA:   3'- gUCUUGGG----CGCAgCaGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 72383 0.66 0.975655
Target:  5'- gGGAGCgaaagaagugacgaCgGCGaCGUCGACGACGgCGa -3'
miRNA:   3'- gUCUUG--------------GgCGCaGCAGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 74846 0.71 0.831095
Target:  5'- -cGGGCCCGCGUCcUCGuCGaucaccagcggucGCGUCGg -3'
miRNA:   3'- guCUUGGGCGCAGcAGCuGC-------------UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 79065 0.67 0.965555
Target:  5'- cCAGAGCCUGCGgCGUCaGGCcACGaaagCGg -3'
miRNA:   3'- -GUCUUGGGCGCaGCAG-CUGcUGCa---GC- -5'
29792 3' -55.6 NC_006273.1 + 79942 0.82 0.29817
Target:  5'- aCAGAACCCGCGUCGcCGggcACGGCGgCGg -3'
miRNA:   3'- -GUCUUGGGCGCAGCaGC---UGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 81109 0.7 0.876371
Target:  5'- gAGAAaaagCCGCGUCaucUCGGCGGCGUaCGa -3'
miRNA:   3'- gUCUUg---GGCGCAGc--AGCUGCUGCA-GC- -5'
29792 3' -55.6 NC_006273.1 + 81279 0.72 0.79025
Target:  5'- aCAuGACCCa-GUUGUCGGCGAUGUCGc -3'
miRNA:   3'- -GUcUUGGGcgCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 83333 0.66 0.980725
Target:  5'- -uGGACCCgGCGUgGUgggaccCGGCGGCGcCGu -3'
miRNA:   3'- guCUUGGG-CGCAgCA------GCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 87341 0.67 0.962383
Target:  5'- ------aCGaCGUCGUCGACGACG-CGg -3'
miRNA:   3'- gucuuggGC-GCAGCAGCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 88003 0.66 0.971326
Target:  5'- aAGAGCgCCGacagGUCGUgcaccuccccccCGGCGGCGUCc -3'
miRNA:   3'- gUCUUG-GGCg---CAGCA------------GCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 93092 0.7 0.883121
Target:  5'- -cGAGCaCCGCGUCcaCGccgcccacACGACGUCGg -3'
miRNA:   3'- guCUUG-GGCGCAGcaGC--------UGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 94273 0.66 0.973934
Target:  5'- gAG-ACCCGCGUCGUUcaGCGagagaGCGUCc -3'
miRNA:   3'- gUCuUGGGCGCAGCAGc-UGC-----UGCAGc -5'
29792 3' -55.6 NC_006273.1 + 94710 0.75 0.640148
Target:  5'- ---cACCCGcCGUCGUCGccuGCGGCGUUGg -3'
miRNA:   3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.