miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 95219 0.67 0.951664
Target:  5'- uCGGAGC--GCGUCGUcuaCGACGGCGUUu -3'
miRNA:   3'- -GUCUUGggCGCAGCA---GCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 99298 0.67 0.951664
Target:  5'- ---cGCCCacgGCGUCcUCGGCGuCGUCGg -3'
miRNA:   3'- gucuUGGG---CGCAGcAGCUGCuGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 100076 0.66 0.982665
Target:  5'- aCAGGcGCCCGaggCGUCGcacAUGACGUCu -3'
miRNA:   3'- -GUCU-UGGGCgcaGCAGC---UGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 101486 0.66 0.978628
Target:  5'- ----uUCCGUGUCGaCGGCGAgGUUGg -3'
miRNA:   3'- gucuuGGGCGCAGCaGCUGCUgCAGC- -5'
29792 3' -55.6 NC_006273.1 + 102860 0.66 0.978409
Target:  5'- uCGGAagcaaaaACCa-CGUCGUCuuCGGCGUCGg -3'
miRNA:   3'- -GUCU-------UGGgcGCAGCAGcuGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 104539 0.66 0.978628
Target:  5'- aCAGcuuguGACCCGCGcUCGUCGuCGggaGCG-CGg -3'
miRNA:   3'- -GUC-----UUGGGCGC-AGCAGCuGC---UGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 114359 0.69 0.896011
Target:  5'- aGGGugCCGCccagggCGaCGACGACGUCu -3'
miRNA:   3'- gUCUugGGCGca----GCaGCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 114436 0.67 0.962383
Target:  5'- aAGAcgcCCCGCGUCaccggCGGCGGCGcCa -3'
miRNA:   3'- gUCUu--GGGCGCAGca---GCUGCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 115492 0.66 0.978628
Target:  5'- uCAGAGCCaGCGgCG-CGGCGGCGa-- -3'
miRNA:   3'- -GUCUUGGgCGCaGCaGCUGCUGCagc -5'
29792 3' -55.6 NC_006273.1 + 117355 0.69 0.915996
Target:  5'- uGGAACCCGCGUgcccgccacuuccacCGUCGcuauUGACGUg- -3'
miRNA:   3'- gUCUUGGGCGCA---------------GCAGCu---GCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 117919 0.66 0.980725
Target:  5'- aGGAAaCCGCGgcggCGUCGuCGuCGUCc -3'
miRNA:   3'- gUCUUgGGCGCa---GCAGCuGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 118906 0.67 0.965555
Target:  5'- gAGAGCCC-CGUUGUuacCGcuuCGACGUCu -3'
miRNA:   3'- gUCUUGGGcGCAGCA---GCu--GCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 124123 0.69 0.908065
Target:  5'- aCAGAGCUCgGCGUUGgCGGCGGCauuugccgcuguGUCGg -3'
miRNA:   3'- -GUCUUGGG-CGCAGCaGCUGCUG------------CAGC- -5'
29792 3' -55.6 NC_006273.1 + 126177 0.68 0.943481
Target:  5'- cUAGAAguaaCUGaCGUCGUCGugGACGcCa -3'
miRNA:   3'- -GUCUUg---GGC-GCAGCAGCugCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 126862 0.66 0.980725
Target:  5'- gCGGcguAUgUGCGUCGgUGGCGACGUCc -3'
miRNA:   3'- -GUCu--UGgGCGCAGCaGCUGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 129516 0.67 0.955441
Target:  5'- aCGGAcACCCuCGcCGguagaCGAUGACGUCGa -3'
miRNA:   3'- -GUCU-UGGGcGCaGCa----GCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 129669 0.66 0.971326
Target:  5'- aGGAcGCCCGCuucuGUCGUCcGCGAcccguuaaCGUCGa -3'
miRNA:   3'- gUCU-UGGGCG----CAGCAGcUGCU--------GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 142025 0.68 0.943481
Target:  5'- gAGAACCaGCGUCGgccCGugGugccguccACGUCGu -3'
miRNA:   3'- gUCUUGGgCGCAGCa--GCugC--------UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 147206 0.68 0.943481
Target:  5'- gAGAucCCCGCGUC--CGACGAUGUg- -3'
miRNA:   3'- gUCUu-GGGCGCAGcaGCUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 147409 0.66 0.976366
Target:  5'- -cGcGCCCagugGCGUCGgcgCGGCGuccgGCGUCGg -3'
miRNA:   3'- guCuUGGG----CGCAGCa--GCUGC----UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.