miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 232743 0.71 0.854953
Target:  5'- cCAGAGCUugaGCGUCGgCG-CGGCGUCu -3'
miRNA:   3'- -GUCUUGGg--CGCAGCaGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 229643 0.67 0.955441
Target:  5'- aAGAAUCCGaCGacgaGUCGuCGGCGUCu -3'
miRNA:   3'- gUCUUGGGC-GCag--CAGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 227636 0.73 0.754569
Target:  5'- cCGGAGCCCGC-UCGaUCGACGGCuaCGg -3'
miRNA:   3'- -GUCUUGGGCGcAGC-AGCUGCUGcaGC- -5'
29792 3' -55.6 NC_006273.1 + 222611 0.66 0.973934
Target:  5'- cCAGAuCUCGCGUCGa-GAC-ACGUCa -3'
miRNA:   3'- -GUCUuGGGCGCAGCagCUGcUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 222509 0.67 0.955441
Target:  5'- cCAGAcguUCgGCGUCGUCcACGGCGUa- -3'
miRNA:   3'- -GUCUu--GGgCGCAGCAGcUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 221544 0.72 0.807345
Target:  5'- aAGGACCCcgaauGCGUcCGUCGGuccCGACGUCc -3'
miRNA:   3'- gUCUUGGG-----CGCA-GCAGCU---GCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 219943 0.66 0.973682
Target:  5'- gCAGAauacgccgcucgcGCUCGCGUCGcucaUCGggcaacGCGGCGUCu -3'
miRNA:   3'- -GUCU-------------UGGGCGCAGC----AGC------UGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 219706 0.68 0.943481
Target:  5'- ----cCUCGCG-CGUCGACGaacGCGUCGu -3'
miRNA:   3'- gucuuGGGCGCaGCAGCUGC---UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 213132 0.67 0.965555
Target:  5'- gCGGAG-CCGCGUCGcUCGcCGGCGcCc -3'
miRNA:   3'- -GUCUUgGGCGCAGC-AGCuGCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 211773 0.67 0.959013
Target:  5'- gCAG-GCCCGgGcUCGgCGGCGACGUg- -3'
miRNA:   3'- -GUCuUGGGCgC-AGCaGCUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 204922 0.67 0.965555
Target:  5'- --cGAUCCGCGUCagcccCGACGugGUUGu -3'
miRNA:   3'- gucUUGGGCGCAGca---GCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 201256 0.67 0.959013
Target:  5'- -cGGGCCgGC-UUGUCGGCGAuUGUCGc -3'
miRNA:   3'- guCUUGGgCGcAGCAGCUGCU-GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 201115 0.7 0.89223
Target:  5'- gGGGACCCGgGUgucgcgacaUGUCGACGACaggugcggauuagugGUCGu -3'
miRNA:   3'- gUCUUGGGCgCA---------GCAGCUGCUG---------------CAGC- -5'
29792 3' -55.6 NC_006273.1 + 199443 0.66 0.978628
Target:  5'- -cGAACuCCaCGUCGUCGGCGuguACGUa- -3'
miRNA:   3'- guCUUG-GGcGCAGCAGCUGC---UGCAgc -5'
29792 3' -55.6 NC_006273.1 + 198175 0.67 0.955441
Target:  5'- -uGGGCaCGCG-CGUCGGCcGCGUCGc -3'
miRNA:   3'- guCUUGgGCGCaGCAGCUGcUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 196862 0.76 0.572158
Target:  5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 196756 0.66 0.978628
Target:  5'- ----cCCCGCGUCGcugcUGACGgccguGCGUCGg -3'
miRNA:   3'- gucuuGGGCGCAGCa---GCUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 195695 0.7 0.889669
Target:  5'- aCGGAGCcguCCGCGUgUGUaaaCGGCGugGUCGc -3'
miRNA:   3'- -GUCUUG---GGCGCA-GCA---GCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 194351 0.66 0.976366
Target:  5'- uCAGAcGCCCGagcaGUCGACGcCGUCc -3'
miRNA:   3'- -GUCU-UGGGCgcagCAGCUGCuGCAGc -5'
29792 3' -55.6 NC_006273.1 + 193913 0.69 0.902144
Target:  5'- aAGAaaGCgCCGUGUUGUgagcaGACGACGUUGg -3'
miRNA:   3'- gUCU--UG-GGCGCAGCAg----CUGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.