miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 189450 0.69 0.896011
Target:  5'- gGGAGCCgGCcUCG-CGACGAagucuCGUCGg -3'
miRNA:   3'- gUCUUGGgCGcAGCaGCUGCU-----GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 189316 0.66 0.973934
Target:  5'- gCGGcACCUGCGgCGUCGGCGG-GUgGg -3'
miRNA:   3'- -GUCuUGGGCGCaGCAGCUGCUgCAgC- -5'
29792 3' -55.6 NC_006273.1 + 188355 0.67 0.968534
Target:  5'- aCAGAuaacgugaaACaCCGCGgucauccaaGUCgGGCGGCGUCGg -3'
miRNA:   3'- -GUCU---------UG-GGCGCag-------CAG-CUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 188008 0.66 0.973934
Target:  5'- cCGGcaaCCGCGUCGUCGuuGcuauCGUCGc -3'
miRNA:   3'- -GUCuugGGCGCAGCAGCugCu---GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 187944 0.68 0.947679
Target:  5'- uGGcAGCagCGCGU--UCGACGACGUCGu -3'
miRNA:   3'- gUC-UUGg-GCGCAgcAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 187513 0.68 0.93907
Target:  5'- aAGAAgCCGCGUCGgUCacagGACGGCGa-- -3'
miRNA:   3'- gUCUUgGGCGCAGC-AG----CUGCUGCagc -5'
29792 3' -55.6 NC_006273.1 + 187422 0.69 0.908646
Target:  5'- -uGAACCCGCG-CGgcggucuguuauccgCGACGACG-CGu -3'
miRNA:   3'- guCUUGGGCGCaGCa--------------GCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 187216 0.66 0.971326
Target:  5'- gCGGG--CUGCGUCGccuUCGGUGACGUCGg -3'
miRNA:   3'- -GUCUugGGCGCAGC---AGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 187114 0.71 0.831891
Target:  5'- cCAGAucguCCCGCGg-GUCuuCGACGUCGc -3'
miRNA:   3'- -GUCUu---GGGCGCagCAGcuGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 185442 0.66 0.971326
Target:  5'- aGGAACUcuCGCGUCGcCGGCGguACG-CGa -3'
miRNA:   3'- gUCUUGG--GCGCAGCaGCUGC--UGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 184617 0.67 0.955441
Target:  5'- gCGGuacauCCCGCGUCGUgauuccguaGACGccaggGCGUCGg -3'
miRNA:   3'- -GUCuu---GGGCGCAGCAg--------CUGC-----UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 177526 0.69 0.919266
Target:  5'- -cGAACCgGCGgCGUUGAaCGugGUCc -3'
miRNA:   3'- guCUUGGgCGCaGCAGCU-GCugCAGc -5'
29792 3' -55.6 NC_006273.1 + 171822 0.67 0.959013
Target:  5'- aGGuGCUCGagaGUCGU-GGCGAUGUCGa -3'
miRNA:   3'- gUCuUGGGCg--CAGCAgCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 170058 0.73 0.726753
Target:  5'- gGGcAACCCGgGUCGaCGAUGGgGUCGg -3'
miRNA:   3'- gUC-UUGGGCgCAGCaGCUGCUgCAGC- -5'
29792 3' -55.6 NC_006273.1 + 163691 0.66 0.980725
Target:  5'- aCAGAccGCCUGCcaCGUCGGCGGCc--- -3'
miRNA:   3'- -GUCU--UGGGCGcaGCAGCUGCUGcagc -5'
29792 3' -55.6 NC_006273.1 + 162971 0.7 0.876371
Target:  5'- gCGGAGCggugguuucgUCGcCGUCGUCGACGucgcCGUCGu -3'
miRNA:   3'- -GUCUUG----------GGC-GCAGCAGCUGCu---GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 161849 0.7 0.889669
Target:  5'- aGGAGCaCGUgaGUCGUCGGCGAggggUGUCGa -3'
miRNA:   3'- gUCUUGgGCG--CAGCAGCUGCU----GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 160888 0.66 0.978628
Target:  5'- -cGAGCCgGCGcCGgguaaauaaaUCGGCGgugGCGUCGg -3'
miRNA:   3'- guCUUGGgCGCaGC----------AGCUGC---UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 158703 0.67 0.959013
Target:  5'- gCAGGGCacaCGCGg-GUCGGCGGCGa-- -3'
miRNA:   3'- -GUCUUGg--GCGCagCAGCUGCUGCagc -5'
29792 3' -55.6 NC_006273.1 + 158232 0.72 0.807345
Target:  5'- -cGGGCgCGCGUCGgcCGGCGACGgCGg -3'
miRNA:   3'- guCUUGgGCGCAGCa-GCUGCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.