miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 156267 0.68 0.934444
Target:  5'- aAGaAACCCGgGUgGgagCGACGcCGUCGc -3'
miRNA:   3'- gUC-UUGGGCgCAgCa--GCUGCuGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 201115 0.7 0.89223
Target:  5'- gGGGACCCGgGUgucgcgacaUGUCGACGACaggugcggauuagugGUCGu -3'
miRNA:   3'- gUCUUGGGCgCA---------GCAGCUGCUG---------------CAGC- -5'
29792 3' -55.6 NC_006273.1 + 33839 0.7 0.89223
Target:  5'- aCAGGcccaGCCCGCGgggagcagaaaguagUCGUCGACcaGCGUCu -3'
miRNA:   3'- -GUCU----UGGGCGC---------------AGCAGCUGc-UGCAGc -5'
29792 3' -55.6 NC_006273.1 + 189450 0.69 0.896011
Target:  5'- gGGAGCCgGCcUCG-CGACGAagucuCGUCGg -3'
miRNA:   3'- gUCUUGGgCGcAGCaGCUGCU-----GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 193913 0.69 0.902144
Target:  5'- aAGAaaGCgCCGUGUUGUgagcaGACGACGUUGg -3'
miRNA:   3'- gUCU--UG-GGCGCAGCAg----CUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 124123 0.69 0.908065
Target:  5'- aCAGAGCUCgGCGUUGgCGGCGGCauuugccgcuguGUCGg -3'
miRNA:   3'- -GUCUUGGG-CGCAGCaGCUGCUG------------CAGC- -5'
29792 3' -55.6 NC_006273.1 + 187422 0.69 0.908646
Target:  5'- -uGAACCCGCG-CGgcggucuguuauccgCGACGACG-CGu -3'
miRNA:   3'- guCUUGGGCGCaGCa--------------GCUGCUGCaGC- -5'
29792 3' -55.6 NC_006273.1 + 177526 0.69 0.919266
Target:  5'- -cGAACCgGCGgCGUUGAaCGugGUCc -3'
miRNA:   3'- guCUUGGgCGCaGCAGCU-GCugCAGc -5'
29792 3' -55.6 NC_006273.1 + 30970 0.68 0.929106
Target:  5'- -cGAGCCCaGCGUgGUCG-CGccgcagcACGUCGa -3'
miRNA:   3'- guCUUGGG-CGCAgCAGCuGC-------UGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 195695 0.7 0.889669
Target:  5'- aCGGAGCcguCCGCGUgUGUaaaCGGCGugGUCGc -3'
miRNA:   3'- -GUCUUG---GGCGCA-GCA---GCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 162971 0.7 0.876371
Target:  5'- gCGGAGCggugguuucgUCGcCGUCGUCGACGucgcCGUCGu -3'
miRNA:   3'- -GUCUUG----------GGC-GCAGCAGCUGCu---GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 232743 0.71 0.854953
Target:  5'- cCAGAGCUugaGCGUCGgCG-CGGCGUCu -3'
miRNA:   3'- -GUCUUGGg--CGCAGCaGCuGCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 196862 0.76 0.572158
Target:  5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 156417 0.76 0.601186
Target:  5'- gCGGAcggcguacauCCCGCGUgggucaGUCGACGGCGUCGc -3'
miRNA:   3'- -GUCUu---------GGGCGCAg-----CAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 42676 0.74 0.69827
Target:  5'- gAGAcgGCCCGUGUacacgagcuUGUUGACGGCGUUGa -3'
miRNA:   3'- gUCU--UGGGCGCA---------GCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 40466 0.73 0.726753
Target:  5'- uGGuuaCCGCGggauaCGUCGGCGugGUCGa -3'
miRNA:   3'- gUCuugGGCGCa----GCAGCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 227636 0.73 0.754569
Target:  5'- cCGGAGCCCGC-UCGaUCGACGGCuaCGg -3'
miRNA:   3'- -GUCUUGGGCGcAGC-AGCUGCUGcaGC- -5'
29792 3' -55.6 NC_006273.1 + 221544 0.72 0.807345
Target:  5'- aAGGACCCcgaauGCGUcCGUCGGuccCGACGUCc -3'
miRNA:   3'- gUCUUGGG-----CGCA-GCAGCU---GCUGCAGc -5'
29792 3' -55.6 NC_006273.1 + 50658 0.71 0.823865
Target:  5'- aAGAcgUCGCGUUGUCGGUGACGUUGg -3'
miRNA:   3'- gUCUugGGCGCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 74846 0.71 0.831095
Target:  5'- -cGGGCCCGCGUCcUCGuCGaucaccagcggucGCGUCGg -3'
miRNA:   3'- guCUUGGGCGCAGcAGCuGC-------------UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.