Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29792 | 3' | -55.6 | NC_006273.1 | + | 156267 | 0.68 | 0.934444 |
Target: 5'- aAGaAACCCGgGUgGgagCGACGcCGUCGc -3' miRNA: 3'- gUC-UUGGGCgCAgCa--GCUGCuGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 30970 | 0.68 | 0.929106 |
Target: 5'- -cGAGCCCaGCGUgGUCG-CGccgcagcACGUCGa -3' miRNA: 3'- guCUUGGG-CGCAgCAGCuGC-------UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 74846 | 0.71 | 0.831095 |
Target: 5'- -cGGGCCCGCGUCcUCGuCGaucaccagcggucGCGUCGg -3' miRNA: 3'- guCUUGGGCGCAGcAGCuGC-------------UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 50658 | 0.71 | 0.823865 |
Target: 5'- aAGAcgUCGCGUUGUCGGUGACGUUGg -3' miRNA: 3'- gUCUugGGCGCAGCAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 221544 | 0.72 | 0.807345 |
Target: 5'- aAGGACCCcgaauGCGUcCGUCGGuccCGACGUCc -3' miRNA: 3'- gUCUUGGG-----CGCA-GCAGCU---GCUGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 227636 | 0.73 | 0.754569 |
Target: 5'- cCGGAGCCCGC-UCGaUCGACGGCuaCGg -3' miRNA: 3'- -GUCUUGGGCGcAGC-AGCUGCUGcaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 40466 | 0.73 | 0.726753 |
Target: 5'- uGGuuaCCGCGggauaCGUCGGCGugGUCGa -3' miRNA: 3'- gUCuugGGCGCa----GCAGCUGCugCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 42676 | 0.74 | 0.69827 |
Target: 5'- gAGAcgGCCCGUGUacacgagcuUGUUGACGGCGUUGa -3' miRNA: 3'- gUCU--UGGGCGCA---------GCAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 156417 | 0.76 | 0.601186 |
Target: 5'- gCGGAcggcguacauCCCGCGUgggucaGUCGACGGCGUCGc -3' miRNA: 3'- -GUCUu---------GGGCGCAg-----CAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 196862 | 0.76 | 0.572158 |
Target: 5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3' miRNA: 3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 232743 | 0.71 | 0.854953 |
Target: 5'- cCAGAGCUugaGCGUCGgCG-CGGCGUCu -3' miRNA: 3'- -GUCUUGGg--CGCAGCaGCuGCUGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 162971 | 0.7 | 0.876371 |
Target: 5'- gCGGAGCggugguuucgUCGcCGUCGUCGACGucgcCGUCGu -3' miRNA: 3'- -GUCUUG----------GGC-GCAGCAGCUGCu---GCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 177526 | 0.69 | 0.919266 |
Target: 5'- -cGAACCgGCGgCGUUGAaCGugGUCc -3' miRNA: 3'- guCUUGGgCGCaGCAGCU-GCugCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 187422 | 0.69 | 0.908646 |
Target: 5'- -uGAACCCGCG-CGgcggucuguuauccgCGACGACG-CGu -3' miRNA: 3'- guCUUGGGCGCaGCa--------------GCUGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 124123 | 0.69 | 0.908065 |
Target: 5'- aCAGAGCUCgGCGUUGgCGGCGGCauuugccgcuguGUCGg -3' miRNA: 3'- -GUCUUGGG-CGCAGCaGCUGCUG------------CAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 193913 | 0.69 | 0.902144 |
Target: 5'- aAGAaaGCgCCGUGUUGUgagcaGACGACGUUGg -3' miRNA: 3'- gUCU--UG-GGCGCAGCAg----CUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 189450 | 0.69 | 0.896011 |
Target: 5'- gGGAGCCgGCcUCG-CGACGAagucuCGUCGg -3' miRNA: 3'- gUCUUGGgCGcAGCaGCUGCU-----GCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 33839 | 0.7 | 0.89223 |
Target: 5'- aCAGGcccaGCCCGCGgggagcagaaaguagUCGUCGACcaGCGUCu -3' miRNA: 3'- -GUCU----UGGGCGC---------------AGCAGCUGc-UGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 201115 | 0.7 | 0.89223 |
Target: 5'- gGGGACCCGgGUgucgcgacaUGUCGACGACaggugcggauuagugGUCGu -3' miRNA: 3'- gUCUUGGGCgCA---------GCAGCUGCUG---------------CAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 195695 | 0.7 | 0.889669 |
Target: 5'- aCGGAGCcguCCGCGUgUGUaaaCGGCGugGUCGc -3' miRNA: 3'- -GUCUUG---GGCGCA-GCA---GCUGCugCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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