Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29792 | 3' | -55.6 | NC_006273.1 | + | 196862 | 0.76 | 0.572158 |
Target: 5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3' miRNA: 3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 79942 | 0.82 | 0.29817 |
Target: 5'- aCAGAACCCGCGUCGcCGggcACGGCGgCGg -3' miRNA: 3'- -GUCUUGGGCGCAGCaGC---UGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 201115 | 0.7 | 0.89223 |
Target: 5'- gGGGACCCGgGUgucgcgacaUGUCGACGACaggugcggauuagugGUCGu -3' miRNA: 3'- gUCUUGGGCgCA---------GCAGCUGCUG---------------CAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 33839 | 0.7 | 0.89223 |
Target: 5'- aCAGGcccaGCCCGCGgggagcagaaaguagUCGUCGACcaGCGUCu -3' miRNA: 3'- -GUCU----UGGGCGC---------------AGCAGCUGc-UGCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 189450 | 0.69 | 0.896011 |
Target: 5'- gGGAGCCgGCcUCG-CGACGAagucuCGUCGg -3' miRNA: 3'- gUCUUGGgCGcAGCaGCUGCU-----GCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 33237 | 0.67 | 0.951664 |
Target: 5'- gAGGGCCC-CGgggCGgCGACGACGgCGg -3' miRNA: 3'- gUCUUGGGcGCa--GCaGCUGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 32645 | 0.67 | 0.951664 |
Target: 5'- aCGGAugACCUG-GcCGUCGGCGucGCGUCGc -3' miRNA: 3'- -GUCU--UGGGCgCaGCAGCUGC--UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 187944 | 0.68 | 0.947679 |
Target: 5'- uGGcAGCagCGCGU--UCGACGACGUCGu -3' miRNA: 3'- gUC-UUGg-GCGCAgcAGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 219706 | 0.68 | 0.943481 |
Target: 5'- ----cCUCGCG-CGUCGACGaacGCGUCGu -3' miRNA: 3'- gucuuGGGCGCaGCAGCUGC---UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 142025 | 0.68 | 0.943481 |
Target: 5'- gAGAACCaGCGUCGgccCGugGugccguccACGUCGu -3' miRNA: 3'- gUCUUGGgCGCAGCa--GCugC--------UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 26905 | 0.68 | 0.93907 |
Target: 5'- gCGGAGgUCG-GUCGaUGACGAUGUCGa -3' miRNA: 3'- -GUCUUgGGCgCAGCaGCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 156267 | 0.68 | 0.934444 |
Target: 5'- aAGaAACCCGgGUgGgagCGACGcCGUCGc -3' miRNA: 3'- gUC-UUGGGCgCAgCa--GCUGCuGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 193913 | 0.69 | 0.902144 |
Target: 5'- aAGAaaGCgCCGUGUUGUgagcaGACGACGUUGg -3' miRNA: 3'- gUCU--UG-GGCGCAGCAg----CUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 124123 | 0.69 | 0.908065 |
Target: 5'- aCAGAGCUCgGCGUUGgCGGCGGCauuugccgcuguGUCGg -3' miRNA: 3'- -GUCUUGGG-CGCAGCaGCUGCUG------------CAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 187422 | 0.69 | 0.908646 |
Target: 5'- -uGAACCCGCG-CGgcggucuguuauccgCGACGACG-CGu -3' miRNA: 3'- guCUUGGGCGCaGCa--------------GCUGCUGCaGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 177526 | 0.69 | 0.919266 |
Target: 5'- -cGAACCgGCGgCGUUGAaCGugGUCc -3' miRNA: 3'- guCUUGGgCGCaGCAGCU-GCugCAGc -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 30970 | 0.68 | 0.929106 |
Target: 5'- -cGAGCCCaGCGUgGUCG-CGccgcagcACGUCGa -3' miRNA: 3'- guCUUGGG-CGCAgCAGCuGC-------UGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 34254 | 0.66 | 0.982665 |
Target: 5'- --uAAUCCGCaccuGUCGUCGAC-AUGUCGc -3' miRNA: 3'- gucUUGGGCG----CAGCAGCUGcUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 1970 | 0.76 | 0.572158 |
Target: 5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3' miRNA: 3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5' |
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29792 | 3' | -55.6 | NC_006273.1 | + | 94710 | 0.75 | 0.640148 |
Target: 5'- ---cACCCGcCGUCGUCGccuGCGGCGUUGg -3' miRNA: 3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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