miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 3' -55.6 NC_006273.1 + 148043 1.08 0.007762
Target:  5'- gCAGAACCCGCGUCGUCGACGACGUCGu -3'
miRNA:   3'- -GUCUUGGGCGCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 31657 0.69 0.924543
Target:  5'- uCAGGccAgCUGCGUCGUCaagGACGGCGUg- -3'
miRNA:   3'- -GUCU--UgGGCGCAGCAG---CUGCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 126177 0.68 0.943481
Target:  5'- cUAGAAguaaCUGaCGUCGUCGugGACGcCa -3'
miRNA:   3'- -GUCUUg---GGC-GCAGCAGCugCUGCaGc -5'
29792 3' -55.6 NC_006273.1 + 34254 0.66 0.982665
Target:  5'- --uAAUCCGCaccuGUCGUCGAC-AUGUCGc -3'
miRNA:   3'- gucUUGGGCG----CAGCAGCUGcUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 44569 0.73 0.745385
Target:  5'- uGGAuuCCCGUGUgUGUCGugGugGUCa -3'
miRNA:   3'- gUCUu-GGGCGCA-GCAGCugCugCAGc -5'
29792 3' -55.6 NC_006273.1 + 81279 0.72 0.79025
Target:  5'- aCAuGACCCa-GUUGUCGGCGAUGUCGc -3'
miRNA:   3'- -GUcUUGGGcgCAGCAGCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 187114 0.71 0.831891
Target:  5'- cCAGAucguCCCGCGg-GUCuuCGACGUCGc -3'
miRNA:   3'- -GUCUu---GGGCGCagCAGcuGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 81109 0.7 0.876371
Target:  5'- gAGAAaaagCCGCGUCaucUCGGCGGCGUaCGa -3'
miRNA:   3'- gUCUUg---GGCGCAGc--AGCUGCUGCA-GC- -5'
29792 3' -55.6 NC_006273.1 + 161849 0.7 0.889669
Target:  5'- aGGAGCaCGUgaGUCGUCGGCGAggggUGUCGa -3'
miRNA:   3'- gUCUUGgGCG--CAGCAGCUGCU----GCAGC- -5'
29792 3' -55.6 NC_006273.1 + 26169 0.69 0.919266
Target:  5'- gGGAAaCCGCGUCGUCGGaaACGgagCGu -3'
miRNA:   3'- gUCUUgGGCGCAGCAGCUgcUGCa--GC- -5'
29792 3' -55.6 NC_006273.1 + 20930 0.69 0.896011
Target:  5'- aCGGGGCUgGCGUuucuagguggcCGU-GACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCA-----------GCAgCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 803 0.7 0.889669
Target:  5'- aCGGAGCcguCCGCGUgUGUaaaCGGCGugGUCGc -3'
miRNA:   3'- -GUCUUG---GGCGCA-GCA---GCUGCugCAGC- -5'
29792 3' -55.6 NC_006273.1 + 1970 0.76 0.572158
Target:  5'- gCGGGGCCgGCGaCGggGACGACGUCGc -3'
miRNA:   3'- -GUCUUGGgCGCaGCagCUGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 47423 0.69 0.913773
Target:  5'- aCAucAUCCGCGacUCGUaCGACGuCGUCGa -3'
miRNA:   3'- -GUcuUGGGCGC--AGCA-GCUGCuGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 94710 0.75 0.640148
Target:  5'- ---cACCCGcCGUCGUCGccuGCGGCGUUGg -3'
miRNA:   3'- gucuUGGGC-GCAGCAGC---UGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 93092 0.7 0.883121
Target:  5'- -cGAGCaCCGCGUCcaCGccgcccacACGACGUCGg -3'
miRNA:   3'- guCUUG-GGCGCAGcaGC--------UGCUGCAGC- -5'
29792 3' -55.6 NC_006273.1 + 117355 0.69 0.915996
Target:  5'- uGGAACCCGCGUgcccgccacuuccacCGUCGcuauUGACGUg- -3'
miRNA:   3'- gUCUUGGGCGCA---------------GCAGCu---GCUGCAgc -5'
29792 3' -55.6 NC_006273.1 + 187513 0.68 0.93907
Target:  5'- aAGAAgCCGCGUCGgUCacagGACGGCGa-- -3'
miRNA:   3'- gUCUUgGGCGCAGC-AG----CUGCUGCagc -5'
29792 3' -55.6 NC_006273.1 + 170058 0.73 0.726753
Target:  5'- gGGcAACCCGgGUCGaCGAUGGgGUCGg -3'
miRNA:   3'- gUC-UUGGGCgCAGCaGCUGCUgCAGC- -5'
29792 3' -55.6 NC_006273.1 + 158232 0.72 0.807345
Target:  5'- -cGGGCgCGCGUCGgcCGGCGACGgCGg -3'
miRNA:   3'- guCUUGgGCGCAGCa-GCUGCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.