miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 5' -53.3 NC_006273.1 + 93117 0.66 0.992056
Target:  5'- -aCGACGUCGGcacagCGGgGU-GCGGGCc -3'
miRNA:   3'- caGUUGCAGUCa----GCCgUAuCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 124114 0.66 0.992056
Target:  5'- -gCGGCGUCgacagAGcUCGGCGUuGGCG-GCGg -3'
miRNA:   3'- caGUUGCAG-----UC-AGCCGUA-UCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 194916 0.66 0.992056
Target:  5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3'
miRNA:   3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 220791 0.66 0.992056
Target:  5'- -aCGGCGUCAG-CGGCuc-GCG-GCa -3'
miRNA:   3'- caGUUGCAGUCaGCCGuauCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 232750 0.66 0.992056
Target:  5'- uUgAGCGUCGGcgCGGCGUcuGGCGucuuGCa -3'
miRNA:   3'- cAgUUGCAGUCa-GCCGUA--UCGCu---CGc -5'
29792 5' -53.3 NC_006273.1 + 234854 0.66 0.992056
Target:  5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3'
miRNA:   3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 23 0.66 0.992056
Target:  5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3'
miRNA:   3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 121 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 166 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 234997 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 195014 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 195059 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 234952 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 147418 0.66 0.99094
Target:  5'- --uGGCGUCGGcgCGGCGUccGGCGucggggguGGCGg -3'
miRNA:   3'- cagUUGCAGUCa-GCCGUA--UCGC--------UCGC- -5'
29792 5' -53.3 NC_006273.1 + 113567 0.66 0.989705
Target:  5'- aUCAACGUgCAccacuacccGUCGGCGgc-CGAGCGc -3'
miRNA:   3'- cAGUUGCA-GU---------CAGCCGUaucGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 48225 0.66 0.989705
Target:  5'- cUCAGCGUCugcacgaaaCGGCGUccgcacggaGGCGAGCc -3'
miRNA:   3'- cAGUUGCAGuca------GCCGUA---------UCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 208188 0.66 0.989705
Target:  5'- -aCGACGUCAGgggauucaCGGUAUuuagccaugcAGCGuGCGg -3'
miRNA:   3'- caGUUGCAGUCa-------GCCGUA----------UCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 200271 0.66 0.989574
Target:  5'- -aCGACGUCAGcgaguacguguuuUCGGguCGUAGCGuGCu -3'
miRNA:   3'- caGUUGCAGUC-------------AGCC--GUAUCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 57751 0.66 0.987906
Target:  5'- -aCAGCGUgcaAGUCucgacuaaggagcgGGCGcgAGCGAGCGa -3'
miRNA:   3'- caGUUGCAg--UCAG--------------CCGUa-UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 202553 0.66 0.986842
Target:  5'- -gCAGCGU-GGcCGGCGUGGCG-GCc -3'
miRNA:   3'- caGUUGCAgUCaGCCGUAUCGCuCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.