miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 5' -53.3 NC_006273.1 + 148081 1.1 0.006835
Target:  5'- cGUCAACGUCAGUCGGCAUAGCGAGCGg -3'
miRNA:   3'- -CAGUUGCAGUCAGCCGUAUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 39229 0.75 0.694568
Target:  5'- gGUCAGCGUCAcgCGGCAUGGCGcgacGCu -3'
miRNA:   3'- -CAGUUGCAGUcaGCCGUAUCGCu---CGc -5'
29792 5' -53.3 NC_006273.1 + 95182 0.75 0.714418
Target:  5'- uGUCGACGUagaaaAGaCGGCGUGGCG-GCGu -3'
miRNA:   3'- -CAGUUGCAg----UCaGCCGUAUCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 119721 0.74 0.762682
Target:  5'- -cCAGCGUCAG-CGGgAUGGCGccGGCGc -3'
miRNA:   3'- caGUUGCAGUCaGCCgUAUCGC--UCGC- -5'
29792 5' -53.3 NC_006273.1 + 143226 0.73 0.79035
Target:  5'- -aCGACGUUuuGUCGGCGgAGCGcAGCGa -3'
miRNA:   3'- caGUUGCAGu-CAGCCGUaUCGC-UCGC- -5'
29792 5' -53.3 NC_006273.1 + 125249 0.72 0.825244
Target:  5'- -aCAACGUCugcaccGGgcgCGGCGUcagAGCGAGCGu -3'
miRNA:   3'- caGUUGCAG------UCa--GCCGUA---UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 155573 0.72 0.825244
Target:  5'- uUCAGCGUCGGcucCGGCAgUAGUG-GCGg -3'
miRNA:   3'- cAGUUGCAGUCa--GCCGU-AUCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 113317 0.72 0.84169
Target:  5'- aGUCGACGUCugcuGGUCGGCA-AGCuGGGUc -3'
miRNA:   3'- -CAGUUGCAG----UCAGCCGUaUCG-CUCGc -5'
29792 5' -53.3 NC_006273.1 + 115453 0.71 0.87872
Target:  5'- cGUCAgguucacACGUCGuuagccagcGUCGGCAUAugaagggcGCGGGCGg -3'
miRNA:   3'- -CAGU-------UGCAGU---------CAGCCGUAU--------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 39833 0.71 0.886344
Target:  5'- cUCAGCGUguGgcgCGGC--GGCGAGCc -3'
miRNA:   3'- cAGUUGCAguCa--GCCGuaUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 98102 0.71 0.886344
Target:  5'- cGUCAGCGUaccaAGUCcGUucGGCGGGCGg -3'
miRNA:   3'- -CAGUUGCAg---UCAGcCGuaUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 43214 0.71 0.893044
Target:  5'- -aCGACGUCGcGaUCGGCA-GGCGGGCc -3'
miRNA:   3'- caGUUGCAGU-C-AGCCGUaUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 114447 0.71 0.89952
Target:  5'- cGUCAcCGgCGG-CGGCGccaUGGCGAGCGc -3'
miRNA:   3'- -CAGUuGCaGUCaGCCGU---AUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 116864 0.7 0.905768
Target:  5'- -gCAGCGUgGGUCGGCGUcGCG-GUa -3'
miRNA:   3'- caGUUGCAgUCAGCCGUAuCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 87979 0.7 0.905768
Target:  5'- uGUCAACGUCAG-CGuGCAucUAGUgcuGAGCa -3'
miRNA:   3'- -CAGUUGCAGUCaGC-CGU--AUCG---CUCGc -5'
29792 5' -53.3 NC_006273.1 + 217933 0.7 0.917571
Target:  5'- uUCAACGUUAccggCGGCGUAGUGGaccGCGg -3'
miRNA:   3'- cAGUUGCAGUca--GCCGUAUCGCU---CGC- -5'
29792 5' -53.3 NC_006273.1 + 90470 0.7 0.92844
Target:  5'- -gCAGCGguUCGGgCGGCuugAGCGGGCGc -3'
miRNA:   3'- caGUUGC--AGUCaGCCGua-UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 214369 0.69 0.942988
Target:  5'- aUCGGCGUCGcUUaGCAgAGCGAGCGu -3'
miRNA:   3'- cAGUUGCAGUcAGcCGUaUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 115080 0.69 0.95546
Target:  5'- gGUCAuuucguACGUCGGUUggugcaGGCGUugaAGCGGGCu -3'
miRNA:   3'- -CAGU------UGCAGUCAG------CCGUA---UCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 185294 0.68 0.959168
Target:  5'- cUCaAACGUCGGgcCGGCGUGGUG-GUGa -3'
miRNA:   3'- cAG-UUGCAGUCa-GCCGUAUCGCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.