Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 100276 | 0.68 | 0.959168 |
Target: 5'- -gCAACG-CGcGaCGGCGUAGCGAGaCGg -3' miRNA: 3'- caGUUGCaGU-CaGCCGUAUCGCUC-GC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 185294 | 0.68 | 0.959168 |
Target: 5'- cUCaAACGUCGGgcCGGCGUGGUG-GUGa -3' miRNA: 3'- cAG-UUGCAGUCa-GCCGUAUCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 32659 | 0.68 | 0.962659 |
Target: 5'- cGUCGGCGUCGcGUCG-CAggccCGAGCGg -3' miRNA: 3'- -CAGUUGCAGU-CAGCcGUauc-GCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 30644 | 0.68 | 0.965297 |
Target: 5'- aUCGuCGUCGcGUCGGCAaccgcagaucgcAGCGGGCGc -3' miRNA: 3'- cAGUuGCAGU-CAGCCGUa-----------UCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 148581 | 0.68 | 0.971594 |
Target: 5'- uUCAGCGUCAGUCuGGCcacacucaacgacauCGAGCGc -3' miRNA: 3'- cAGUUGCAGUCAG-CCGuauc-----------GCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 188773 | 0.68 | 0.971872 |
Target: 5'- -gCAGCGU-GGUCGGCuccgucGGCGuGCGg -3' miRNA: 3'- caGUUGCAgUCAGCCGua----UCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 143629 | 0.67 | 0.974543 |
Target: 5'- -cCGACGUUAGUUGGC--GGUGAcGCa -3' miRNA: 3'- caGUUGCAGUCAGCCGuaUCGCU-CGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 114513 | 0.67 | 0.977024 |
Target: 5'- cUCGGCGaCGG-CGuGCAcGGCGGGCGu -3' miRNA: 3'- cAGUUGCaGUCaGC-CGUaUCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 145020 | 0.67 | 0.977024 |
Target: 5'- -cCAGuCGUCGGcgCGGCAUcccAGCGccGGCGg -3' miRNA: 3'- caGUU-GCAGUCa-GCCGUA---UCGC--UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 41567 | 0.67 | 0.979101 |
Target: 5'- cGUCAACGUCGGUUGcucgaacuuguacGCGgUGGUGAcggGCGg -3' miRNA: 3'- -CAGUUGCAGUCAGC-------------CGU-AUCGCU---CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 179424 | 0.67 | 0.979323 |
Target: 5'- cGUC-GCGUCAG-CGGCAcGGUGcuGCGu -3' miRNA: 3'- -CAGuUGCAGUCaGCCGUaUCGCu-CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 102883 | 0.67 | 0.979323 |
Target: 5'- uUCGGCGUCGGgCGGC--GGCGguaacacacGGCGa -3' miRNA: 3'- cAGUUGCAGUCaGCCGuaUCGC---------UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 218867 | 0.67 | 0.981447 |
Target: 5'- uUCAACGUU--UUGGCAUGGCGuccaGGUGu -3' miRNA: 3'- cAGUUGCAGucAGCCGUAUCGC----UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 70812 | 0.67 | 0.981447 |
Target: 5'- -gCAGCGcCAGcggccuggccuUCGGCAcgcUGGCGGGCc -3' miRNA: 3'- caGUUGCaGUC-----------AGCCGU---AUCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 54535 | 0.67 | 0.983214 |
Target: 5'- uGUCGACG-UAGcCGGCGgugcuguUGGCGGuGCGg -3' miRNA: 3'- -CAGUUGCaGUCaGCCGU-------AUCGCU-CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 131256 | 0.67 | 0.983402 |
Target: 5'- aUCGccGCGUCGGgucUCGGCGU-GCGcGCGc -3' miRNA: 3'- cAGU--UGCAGUC---AGCCGUAuCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 133597 | 0.67 | 0.983402 |
Target: 5'- -cCGGCGUCAGUcgcCGGCAccUGGUG-GCu -3' miRNA: 3'- caGUUGCAGUCA---GCCGU--AUCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 64085 | 0.66 | 0.985198 |
Target: 5'- aUCAGag-CAG-CGGCGgGGCGAGCa -3' miRNA: 3'- cAGUUgcaGUCaGCCGUaUCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 189947 | 0.66 | 0.985198 |
Target: 5'- cGUCugcagcuCGUCGGcCGGCGUgGGCGGcucGCGg -3' miRNA: 3'- -CAGuu-----GCAGUCaGCCGUA-UCGCU---CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 202553 | 0.66 | 0.986842 |
Target: 5'- -gCAGCGU-GGcCGGCGUGGCG-GCc -3' miRNA: 3'- caGUUGCAgUCaGCCGUAUCGCuCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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