miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 5' -53.3 NC_006273.1 + 64085 0.66 0.985198
Target:  5'- aUCAGag-CAG-CGGCGgGGCGAGCa -3'
miRNA:   3'- cAGUUgcaGUCaGCCGUaUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 189947 0.66 0.985198
Target:  5'- cGUCugcagcuCGUCGGcCGGCGUgGGCGGcucGCGg -3'
miRNA:   3'- -CAGuu-----GCAGUCaGCCGUA-UCGCU---CGC- -5'
29792 5' -53.3 NC_006273.1 + 131256 0.67 0.983402
Target:  5'- aUCGccGCGUCGGgucUCGGCGU-GCGcGCGc -3'
miRNA:   3'- cAGU--UGCAGUC---AGCCGUAuCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 133597 0.67 0.983402
Target:  5'- -cCGGCGUCAGUcgcCGGCAccUGGUG-GCu -3'
miRNA:   3'- caGUUGCAGUCA---GCCGU--AUCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 54535 0.67 0.983214
Target:  5'- uGUCGACG-UAGcCGGCGgugcuguUGGCGGuGCGg -3'
miRNA:   3'- -CAGUUGCaGUCaGCCGU-------AUCGCU-CGC- -5'
29792 5' -53.3 NC_006273.1 + 218867 0.67 0.981447
Target:  5'- uUCAACGUU--UUGGCAUGGCGuccaGGUGu -3'
miRNA:   3'- cAGUUGCAGucAGCCGUAUCGC----UCGC- -5'
29792 5' -53.3 NC_006273.1 + 70812 0.67 0.981447
Target:  5'- -gCAGCGcCAGcggccuggccuUCGGCAcgcUGGCGGGCc -3'
miRNA:   3'- caGUUGCaGUC-----------AGCCGU---AUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 179424 0.67 0.979323
Target:  5'- cGUC-GCGUCAG-CGGCAcGGUGcuGCGu -3'
miRNA:   3'- -CAGuUGCAGUCaGCCGUaUCGCu-CGC- -5'
29792 5' -53.3 NC_006273.1 + 102883 0.67 0.979323
Target:  5'- uUCGGCGUCGGgCGGC--GGCGguaacacacGGCGa -3'
miRNA:   3'- cAGUUGCAGUCaGCCGuaUCGC---------UCGC- -5'
29792 5' -53.3 NC_006273.1 + 41567 0.67 0.979101
Target:  5'- cGUCAACGUCGGUUGcucgaacuuguacGCGgUGGUGAcggGCGg -3'
miRNA:   3'- -CAGUUGCAGUCAGC-------------CGU-AUCGCU---CGC- -5'
29792 5' -53.3 NC_006273.1 + 114513 0.67 0.977024
Target:  5'- cUCGGCGaCGG-CGuGCAcGGCGGGCGu -3'
miRNA:   3'- cAGUUGCaGUCaGC-CGUaUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 145020 0.67 0.977024
Target:  5'- -cCAGuCGUCGGcgCGGCAUcccAGCGccGGCGg -3'
miRNA:   3'- caGUU-GCAGUCa-GCCGUA---UCGC--UCGC- -5'
29792 5' -53.3 NC_006273.1 + 143629 0.67 0.974543
Target:  5'- -cCGACGUUAGUUGGC--GGUGAcGCa -3'
miRNA:   3'- caGUUGCAGUCAGCCGuaUCGCU-CGc -5'
29792 5' -53.3 NC_006273.1 + 188773 0.68 0.971872
Target:  5'- -gCAGCGU-GGUCGGCuccgucGGCGuGCGg -3'
miRNA:   3'- caGUUGCAgUCAGCCGua----UCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 148581 0.68 0.971594
Target:  5'- uUCAGCGUCAGUCuGGCcacacucaacgacauCGAGCGc -3'
miRNA:   3'- cAGUUGCAGUCAG-CCGuauc-----------GCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 30644 0.68 0.965297
Target:  5'- aUCGuCGUCGcGUCGGCAaccgcagaucgcAGCGGGCGc -3'
miRNA:   3'- cAGUuGCAGU-CAGCCGUa-----------UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 32659 0.68 0.962659
Target:  5'- cGUCGGCGUCGcGUCG-CAggccCGAGCGg -3'
miRNA:   3'- -CAGUUGCAGU-CAGCcGUauc-GCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 100276 0.68 0.959168
Target:  5'- -gCAACG-CGcGaCGGCGUAGCGAGaCGg -3'
miRNA:   3'- caGUUGCaGU-CaGCCGUAUCGCUC-GC- -5'
29792 5' -53.3 NC_006273.1 + 185294 0.68 0.959168
Target:  5'- cUCaAACGUCGGgcCGGCGUGGUG-GUGa -3'
miRNA:   3'- cAG-UUGCAGUCa-GCCGUAUCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 167216 0.68 0.959168
Target:  5'- -aCAGCGUCAG-CGGCcgGUGGUG-GCu -3'
miRNA:   3'- caGUUGCAGUCaGCCG--UAUCGCuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.