Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 115080 | 0.69 | 0.95546 |
Target: 5'- gGUCAuuucguACGUCGGUUggugcaGGCGUugaAGCGGGCu -3' miRNA: 3'- -CAGU------UGCAGUCAG------CCGUA---UCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 214369 | 0.69 | 0.942988 |
Target: 5'- aUCGGCGUCGcUUaGCAgAGCGAGCGu -3' miRNA: 3'- cAGUUGCAGUcAGcCGUaUCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 90470 | 0.7 | 0.92844 |
Target: 5'- -gCAGCGguUCGGgCGGCuugAGCGGGCGc -3' miRNA: 3'- caGUUGC--AGUCaGCCGua-UCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 217933 | 0.7 | 0.917571 |
Target: 5'- uUCAACGUUAccggCGGCGUAGUGGaccGCGg -3' miRNA: 3'- cAGUUGCAGUca--GCCGUAUCGCU---CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 87979 | 0.7 | 0.905768 |
Target: 5'- uGUCAACGUCAG-CGuGCAucUAGUgcuGAGCa -3' miRNA: 3'- -CAGUUGCAGUCaGC-CGU--AUCG---CUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 116864 | 0.7 | 0.905768 |
Target: 5'- -gCAGCGUgGGUCGGCGUcGCG-GUa -3' miRNA: 3'- caGUUGCAgUCAGCCGUAuCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 114447 | 0.71 | 0.89952 |
Target: 5'- cGUCAcCGgCGG-CGGCGccaUGGCGAGCGc -3' miRNA: 3'- -CAGUuGCaGUCaGCCGU---AUCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 43214 | 0.71 | 0.893044 |
Target: 5'- -aCGACGUCGcGaUCGGCA-GGCGGGCc -3' miRNA: 3'- caGUUGCAGU-C-AGCCGUaUCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 39833 | 0.71 | 0.886344 |
Target: 5'- cUCAGCGUguGgcgCGGC--GGCGAGCc -3' miRNA: 3'- cAGUUGCAguCa--GCCGuaUCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 98102 | 0.71 | 0.886344 |
Target: 5'- cGUCAGCGUaccaAGUCcGUucGGCGGGCGg -3' miRNA: 3'- -CAGUUGCAg---UCAGcCGuaUCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 115453 | 0.71 | 0.87872 |
Target: 5'- cGUCAgguucacACGUCGuuagccagcGUCGGCAUAugaagggcGCGGGCGg -3' miRNA: 3'- -CAGU-------UGCAGU---------CAGCCGUAU--------CGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 113317 | 0.72 | 0.84169 |
Target: 5'- aGUCGACGUCugcuGGUCGGCA-AGCuGGGUc -3' miRNA: 3'- -CAGUUGCAG----UCAGCCGUaUCG-CUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 125249 | 0.72 | 0.825244 |
Target: 5'- -aCAACGUCugcaccGGgcgCGGCGUcagAGCGAGCGu -3' miRNA: 3'- caGUUGCAG------UCa--GCCGUA---UCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 155573 | 0.72 | 0.825244 |
Target: 5'- uUCAGCGUCGGcucCGGCAgUAGUG-GCGg -3' miRNA: 3'- cAGUUGCAGUCa--GCCGU-AUCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 143226 | 0.73 | 0.79035 |
Target: 5'- -aCGACGUUuuGUCGGCGgAGCGcAGCGa -3' miRNA: 3'- caGUUGCAGu-CAGCCGUaUCGC-UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 119721 | 0.74 | 0.762682 |
Target: 5'- -cCAGCGUCAG-CGGgAUGGCGccGGCGc -3' miRNA: 3'- caGUUGCAGUCaGCCgUAUCGC--UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 95182 | 0.75 | 0.714418 |
Target: 5'- uGUCGACGUagaaaAGaCGGCGUGGCG-GCGu -3' miRNA: 3'- -CAGUUGCAg----UCaGCCGUAUCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 39229 | 0.75 | 0.694568 |
Target: 5'- gGUCAGCGUCAcgCGGCAUGGCGcgacGCu -3' miRNA: 3'- -CAGUUGCAGUcaGCCGUAUCGCu---CGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 148081 | 1.1 | 0.006835 |
Target: 5'- cGUCAACGUCAGUCGGCAUAGCGAGCGg -3' miRNA: 3'- -CAGUUGCAGUCAGCCGUAUCGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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