miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 5' -53.3 NC_006273.1 + 23 0.66 0.992056
Target:  5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3'
miRNA:   3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 121 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 166 0.66 0.99195
Target:  5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3'
miRNA:   3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 30644 0.68 0.965297
Target:  5'- aUCGuCGUCGcGUCGGCAaccgcagaucgcAGCGGGCGc -3'
miRNA:   3'- cAGUuGCAGU-CAGCCGUa-----------UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 32659 0.68 0.962659
Target:  5'- cGUCGGCGUCGcGUCG-CAggccCGAGCGg -3'
miRNA:   3'- -CAGUUGCAGU-CAGCcGUauc-GCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 39229 0.75 0.694568
Target:  5'- gGUCAGCGUCAcgCGGCAUGGCGcgacGCu -3'
miRNA:   3'- -CAGUUGCAGUcaGCCGUAUCGCu---CGc -5'
29792 5' -53.3 NC_006273.1 + 39833 0.71 0.886344
Target:  5'- cUCAGCGUguGgcgCGGC--GGCGAGCc -3'
miRNA:   3'- cAGUUGCAguCa--GCCGuaUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 41567 0.67 0.979101
Target:  5'- cGUCAACGUCGGUUGcucgaacuuguacGCGgUGGUGAcggGCGg -3'
miRNA:   3'- -CAGUUGCAGUCAGC-------------CGU-AUCGCU---CGC- -5'
29792 5' -53.3 NC_006273.1 + 43214 0.71 0.893044
Target:  5'- -aCGACGUCGcGaUCGGCA-GGCGGGCc -3'
miRNA:   3'- caGUUGCAGU-C-AGCCGUaUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 48225 0.66 0.989705
Target:  5'- cUCAGCGUCugcacgaaaCGGCGUccgcacggaGGCGAGCc -3'
miRNA:   3'- cAGUUGCAGuca------GCCGUA---------UCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 54535 0.67 0.983214
Target:  5'- uGUCGACG-UAGcCGGCGgugcuguUGGCGGuGCGg -3'
miRNA:   3'- -CAGUUGCaGUCaGCCGU-------AUCGCU-CGC- -5'
29792 5' -53.3 NC_006273.1 + 57751 0.66 0.987906
Target:  5'- -aCAGCGUgcaAGUCucgacuaaggagcgGGCGcgAGCGAGCGa -3'
miRNA:   3'- caGUUGCAg--UCAG--------------CCGUa-UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 64085 0.66 0.985198
Target:  5'- aUCAGag-CAG-CGGCGgGGCGAGCa -3'
miRNA:   3'- cAGUUgcaGUCaGCCGUaUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 70812 0.67 0.981447
Target:  5'- -gCAGCGcCAGcggccuggccuUCGGCAcgcUGGCGGGCc -3'
miRNA:   3'- caGUUGCaGUC-----------AGCCGU---AUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 87979 0.7 0.905768
Target:  5'- uGUCAACGUCAG-CGuGCAucUAGUgcuGAGCa -3'
miRNA:   3'- -CAGUUGCAGUCaGC-CGU--AUCG---CUCGc -5'
29792 5' -53.3 NC_006273.1 + 90470 0.7 0.92844
Target:  5'- -gCAGCGguUCGGgCGGCuugAGCGGGCGc -3'
miRNA:   3'- caGUUGC--AGUCaGCCGua-UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 93117 0.66 0.992056
Target:  5'- -aCGACGUCGGcacagCGGgGU-GCGGGCc -3'
miRNA:   3'- caGUUGCAGUCa----GCCgUAuCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 95182 0.75 0.714418
Target:  5'- uGUCGACGUagaaaAGaCGGCGUGGCG-GCGu -3'
miRNA:   3'- -CAGUUGCAg----UCaGCCGUAUCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 98102 0.71 0.886344
Target:  5'- cGUCAGCGUaccaAGUCcGUucGGCGGGCGg -3'
miRNA:   3'- -CAGUUGCAg---UCAGcCGuaUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 100276 0.68 0.959168
Target:  5'- -gCAACG-CGcGaCGGCGUAGCGAGaCGg -3'
miRNA:   3'- caGUUGCaGU-CaGCCGUAUCGCUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.